View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_193 (Length: 251)
Name: NF11280A_low_193
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_193 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 5726600 - 5726343
Alignment:
| Q |
1 |
gtagactggaaaaagcatttctttaatttaattaagatattaacatatgccgacataatgaagcataaaatttagagttaatttttgcacccttaacttc |
100 |
Q |
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| T |
5726600 |
gtagactgaaaaaagcatttctttaatttaattaagatattaacatatgccgacataatgaagcataaaatttagagttaatttttgcaaccttaacttc |
5726501 |
T |
|
| Q |
101 |
ttagtttttccttagcaaacaaataatgt--------------ctcgtagagattccttttgagttaattgatatcattttatgatattgacatattcgg |
186 |
Q |
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|||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5726500 |
ttagtttttccttagc-aacaaataatgtaacatctacgagcaattgcagagattccttttgagttaattgatatcattttatgatattgacatattcgg |
5726402 |
T |
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| Q |
187 |
gtatatatttttcatatgcacaggtttaaattggaactccaaactaaataattagttta |
245 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5726401 |
gtatatatttttcatatgcacaggtttaaattgaaactccaaactaaataattagttta |
5726343 |
T |
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