View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_195 (Length: 250)
Name: NF11280A_low_195
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_195 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 41311252 - 41311027
Alignment:
| Q |
1 |
tgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctct |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311252 |
tgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctct |
41311153 |
T |
|
| Q |
101 |
cccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311152 |
cccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaag |
41311053 |
T |
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| Q |
201 |
atatgggtgatgcaagaatacacaat |
226 |
Q |
| |
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||||||||||||||||||||| |||| |
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| T |
41311052 |
atatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43164930 - 43164710
Alignment:
| Q |
1 |
tgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctct |
100 |
Q |
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||||||||||||||||||||||| ||||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| |||||| |
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| T |
43164930 |
tgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcagagattgctct |
43164831 |
T |
|
| Q |
101 |
cccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaag |
200 |
Q |
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| T |
43164830 |
tccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtctacacttaag |
43164731 |
T |
|
| Q |
201 |
atatgggtgatgcaagaatac |
221 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
43164730 |
atatgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 30165677 - 30165883
Alignment:
| Q |
3 |
aatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcc |
102 |
Q |
| |
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||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||| | |
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| T |
30165677 |
aatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatagctcttc |
30165776 |
T |
|
| Q |
103 |
cagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagat |
202 |
Q |
| |
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|| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||| | ||||| ||||||| |
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| T |
30165777 |
caaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagat |
30165864 |
T |
|
| Q |
203 |
atgggtgatgcaagaatac |
221 |
Q |
| |
|
||||||||||||||||||| |
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| T |
30165865 |
atgggtgatgcaagaatac |
30165883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
8 |
ttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
107 |
Q |
| |
|
|||||||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
108 |
ggtttttatagtgatt |
123 |
Q |
| |
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| ||||||||| |||| |
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| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 30125206 - 30124981
Alignment:
| Q |
1 |
tgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctct |
100 |
Q |
| |
|
||||||| |||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |||| ||||||| | ||||| |
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| T |
30125206 |
tgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaatgtcagaaatagctct |
30125107 |
T |
|
| Q |
101 |
cccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaag |
200 |
Q |
| |
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||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | |||||| | || ||||| |
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| T |
30125106 |
tccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttgagatggatgcagttaag |
30125007 |
T |
|
| Q |
201 |
atatgggtgatgcaagaatacacaat |
226 |
Q |
| |
|
||| |||||||||| |||||| |||| |
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|
| T |
30125006 |
atacgggtgatgcatgaatacgcaat |
30124981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 30131160 - 30131068
Alignment:
| Q |
1 |
tgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
93 |
Q |
| |
|
||||||| |||||||||||||| ||||| || || |||| || |||||||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
30131160 |
tgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 30120112 - 30120068
Alignment:
| Q |
49 |
atgttattattgcctttgatttaaaggaaatgacactgtcagaga |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
30120112 |
atgttattattgcctttgatttaaaggaaacgacaatatcagaga |
30120068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
191 |
tacacttaagatatgggtgatgcaagaatacaca |
224 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
47 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
108 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
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| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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