View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_196 (Length: 250)

Name: NF11280A_low_196
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_196
NF11280A_low_196
[»] chr1 (4 HSPs)
chr1 (9-211)||(10146643-10146845)
chr1 (129-187)||(41560413-41560471)
chr1 (129-201)||(6084159-6084231)
chr1 (129-186)||(39776936-39776993)
[»] chr7 (9 HSPs)
chr7 (129-201)||(26741920-26741992)
chr7 (129-187)||(36101817-36101875)
chr7 (129-187)||(1569200-1569258)
chr7 (129-187)||(9210744-9210802)
chr7 (129-187)||(34341435-34341493)
chr7 (129-186)||(3457545-3457602)
chr7 (132-181)||(21517426-21517475)
chr7 (129-181)||(2882782-2882834)
chr7 (129-181)||(38135259-38135311)
[»] chr2 (3 HSPs)
chr2 (129-201)||(19336919-19336991)
chr2 (129-187)||(9496050-9496108)
chr2 (131-187)||(45077915-45077971)
[»] chr8 (9 HSPs)
chr8 (129-187)||(7615631-7615689)
chr8 (129-187)||(490519-490577)
chr8 (129-187)||(25300283-25300341)
chr8 (129-187)||(29520833-29520891)
chr8 (129-187)||(30559877-30559935)
chr8 (129-187)||(43904705-43904763)
chr8 (132-180)||(16035774-16035822)
chr8 (151-187)||(30689941-30689977)
chr8 (129-181)||(42584543-42584595)
[»] chr3 (5 HSPs)
chr3 (129-187)||(40106660-40106718)
chr3 (132-187)||(30797862-30797917)
chr3 (129-187)||(29601076-29601134)
chr3 (129-187)||(39208792-39208850)
chr3 (129-181)||(40116384-40116436)
[»] chr6 (4 HSPs)
chr6 (129-181)||(24665995-24666047)
chr6 (129-187)||(34545-34603)
chr6 (129-187)||(5096018-5096076)
chr6 (138-187)||(7513030-7513079)
[»] chr5 (2 HSPs)
chr5 (129-181)||(20367077-20367129)
chr5 (130-187)||(43557873-43557930)
[»] chr4 (3 HSPs)
chr4 (129-201)||(51421914-51421986)
chr4 (129-187)||(55007930-55007988)
chr4 (129-181)||(5306480-5306532)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 10146643 - 10146845
Alignment:
Q  9 tgttggacaatgaagaattaatataagaataaaataagtgtagtcaaaaatcaggatgttgtgttgagtgtgtcgtaagaatagatgaaatataactaca 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10146643 tgttggacgatgaagaattaatataagaataaaataagtgtagtcaaaaatcaggatgttgtgttgagtgtgtcgtaagaatagatgaaatataactaca 10146742  T
Q  109 aataataatattaaagagatatgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgtattcaatctcacttactagaag 208  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  10146743 aataacaatattagagagatatgagttggatcgaaatataggttataatataacattaagacgtaatttgatccatgtattccatctcacttactagaag 10146842  T
Q  209 aag 211  Q
    |||    
T  10146843 aag 10146845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 41560413 - 41560471
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||| |||||| |||||||||| ||||||| | |||||||||||| |||||    
T  41560413 atgagttggatccaaatatgggttatgatagaacattatggcgtaatttgatccatgta 41560471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 6084159 - 6084231
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgtattcaatctcactta 201  Q
    |||||||||||| |||||| | |||||||| |||| || | |||||||||||| |||||||  ||||||||||    
T  6084159 atgagttggatcaaaatatggtttatgatagaacaatatggcgtaatttgatccatgtatttgatctcactta 6084231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 39776993 - 39776936
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgt 186  Q
    ||||||||||||||||||| | |||||||| ||||  | | |||||||||||||||||    
T  39776993 atgagttggatcgaaatatggtttatgatagaacacaatggcgtaatttgatcaatgt 39776936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 26741992 - 26741920
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgtattcaatctcactta 201  Q
    |||||||||| |||||||| | |||||||| ||||||| | ||||||||||||||||||  ||||| ||||||    
T  26741992 atgagttggaccgaaatatggtttatgatagaacattatggcgtaatttgatcaatgtaaccaatcccactta 26741920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 36101875 - 36101817
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||| |||||| | |||||||| ||||||| |||||||||||||| |||||    
T  36101875 atgagttggatcaaaatatggtttatgatagaacattatgacgtaatttgatccatgta 36101817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 1569200 - 1569258
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||| |||||| | |||||||| ||||||| | |||||||||||| |||||    
T  1569200 atgagttggatcaaaatatggtttatgatagaacattacggcgtaatttgatcgatgta 1569258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 9210802 - 9210744
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||| |||||| | |||||||| ||||||| | |||||||||||| |||||    
T  9210802 atgagttggatccaaatatggtttatgatacaacattatggcgtaatttgatccatgta 9210744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 34341493 - 34341435
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    ||||||||||| ||||||| | |||||||| ||||||| | |||||||||| |||||||    
T  34341493 atgagttggattgaaatatggtttatgatagaacattatggcgtaatttgaccaatgta 34341435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 3457545 - 3457602
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgt 186  Q
    |||||||||||| |||||| | |||||||| ||||||| | | |||||||||||||||    
T  3457545 atgagttggatcaaaatattgtttatgataaaacattatggcataatttgatcaatgt 3457602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 21517475 - 21517426
Alignment:
Q  132 agttggatcgaaatataggttatgatataacattaagacgtaatttgatc 181  Q
    ||||||||| ||||||   |||||||||||||||| ||||||||||||||    
T  21517475 agttggatccaaatatgatttatgatataacattatgacgtaatttgatc 21517426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 2882834 - 2882782
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatc 181  Q
    |||||||||||||||| || | |||||||| ||||||| | ||||||||||||    
T  2882834 atgagttggatcgaaacatggtttatgatagaacattatggcgtaatttgatc 2882782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 38135311 - 38135259
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatc 181  Q
    |||||||||| |||||||| |||||||||| || |||| | ||||||||||||    
T  38135311 atgagttggaccgaaatatgggttatgatagaatattatggcgtaatttgatc 38135259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 19336991 - 19336919
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgtattcaatctcactta 201  Q
    ||||||||||||||||||| | |||||||| ||||||| | |||||||||||| |||||  ||||| ||||||    
T  19336991 atgagttggatcgaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccaatcccactta 19336919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 9496050 - 9496108
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||| |||||| | |||||||| ||||||| | |||||||||||| |||||    
T  9496050 atgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgta 9496108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 45077915 - 45077971
Alignment:
Q  131 gagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    ||||||||||||||||||| |||||||| ||||| | | | |||||||||| |||||    
T  45077915 gagttggatcgaaatatagtttatgatagaacataatggcataatttgatccatgta 45077971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 7615689 - 7615631
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    ||||||||||||||||||||| |||||||| || |||| || ||||||||||| |||||    
T  7615689 atgagttggatcgaaatatagtttatgataaaatattatgatgtaatttgatcgatgta 7615631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 490519 - 490577
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||| |||||| | |||||||| ||||||| | |||||||||||| |||||    
T  490519 atgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgta 490577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 25300283 - 25300341
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||| |||||| | ||||||||||||| || ||| |||||||||| |||||    
T  25300283 atgagttggatccaaatatggtttatgatataacactatgacataatttgatctatgta 25300341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 29520833 - 29520891
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||| |||||| | |||||||| ||||||| | |||||||||||| |||||    
T  29520833 atgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgta 29520891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 30559877 - 30559935
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||| | |||| | |||||||| ||||||| |||||||||||||| |||||    
T  30559877 atgagttggatccatatatggtttatgatagaacattatgacgtaatttgatccatgta 30559935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 43904763 - 43904705
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||| |||||| | |||||||| ||||||| | |||||||||||| |||||    
T  43904763 atgagttggatctaaatatggtttatgatagaacattatggcgtaatttgatccatgta 43904705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 16035822 - 16035774
Alignment:
Q  132 agttggatcgaaatataggttatgatataacattaagacgtaatttgat 180  Q
    |||||||||||||||| | ||||| || ||||||| |||||||||||||    
T  16035822 agttggatcgaaatatggtttatggtagaacattatgacgtaatttgat 16035774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 30689941 - 30689977
Alignment:
Q  151 ttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||||||| |||||||||||||| |||||    
T  30689941 ttatgatataacattatgacgtaatttgatccatgta 30689977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 42584543 - 42584595
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatc 181  Q
    |||| ||||||| |||||| | |||||||| ||||||| ||||||||||||||    
T  42584543 atgatttggatccaaatatggtttatgatagaacattatgacgtaatttgatc 42584595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 40106718 - 40106660
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||| |||||| | |||||||| ||||||| ||| ||||||||||||||||    
T  40106718 atgagttggatccaaatatggtttatgatagaacattatgacataatttgatcaatgta 40106660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 30797917 - 30797862
Alignment:
Q  132 agttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    ||||||||| |||| ||| |||||||| ||||||| |||||||||||||| |||||    
T  30797917 agttggatccaaatttagtttatgatagaacattatgacgtaatttgatctatgta 30797862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 29601076 - 29601134
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||  |||||||| |||||||| ||||||| || ||||||||||| |||||    
T  29601076 atgagttggattcaaatatagtttatgatagaacattatgatgtaatttgatccatgta 29601134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 39208792 - 39208850
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||| ||||| |||||| | |||||||| ||||||| |||||||||||||| |||||    
T  39208792 atgagtaggatccaaatatggtttatgatagaacattatgacgtaatttgatccatgta 39208850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 40116436 - 40116384
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatc 181  Q
    |||||||||| |||||||| | |||||||| ||||||| | ||||||||||||    
T  40116436 atgagttggaccgaaatatggtttatgatagaacattatggcgtaatttgatc 40116384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 24665995 - 24666047
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatc 181  Q
    ||||||||||||||||||| | |||||||| ||||||| ||| ||||||||||    
T  24665995 atgagttggatcgaaatatggtttatgatagaacattatgacttaatttgatc 24666047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 34603 - 34545
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    ||||||||||| ||||||| | |||||||| ||||||| | |||||||||||| |||||    
T  34603 atgagttggattgaaatatggtttatgatagaacattatggcgtaatttgatccatgta 34545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 5096018 - 5096076
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||| |||||| | |||||||| ||||||| | |||||||||||| |||||    
T  5096018 atgagttggatcaaaatatggtttatgatagaacattatggcgtaatttgatctatgta 5096076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 7513079 - 7513030
Alignment:
Q  138 atcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||| | |||||||| ||||||| |||||||||||||| |||||    
T  7513079 atcgaaatatggtttatgatagaacattatgacgtaatttgatctatgta 7513030  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 20367077 - 20367129
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatc 181  Q
    |||||||||||| |||||| | |||||| ||||||||| ||||||||||||||    
T  20367077 atgagttggatccaaatatggtttatgacataacattatgacgtaatttgatc 20367129  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 43557930 - 43557873
Alignment:
Q  130 tgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||||||||||| | |||||||| ||||||| ||| ||| |||||| |||||    
T  43557930 tgagttggatcgaaatatggtttatgatagaacattatgacttaagttgatctatgta 43557873  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 51421914 - 51421986
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgtattcaatctcactta 201  Q
    |||| ||||||| ||| || | |||||||| ||||||| |||||||||||||| |||||  ||||||||||||    
T  51421914 atgaattggatccaaaaatggtttatgatagaacattatgacgtaatttgatccatgtagccaatctcactta 51421986  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 55007930 - 55007988
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatcaatgta 187  Q
    |||||||||| |||||||| | |||||||| | ||||| |||||||||||||| |||||    
T  55007930 atgagttggaccgaaatatggtttatgatagatcattatgacgtaatttgatccatgta 55007988  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 5306480 - 5306532
Alignment:
Q  129 atgagttggatcgaaatataggttatgatataacattaagacgtaatttgatc 181  Q
    |||||||||||| |||||| | |||||| ||||||||| | ||||||||||||    
T  5306480 atgagttggatccaaatatggtttatgacataacattatggcgtaatttgatc 5306532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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