View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_197 (Length: 250)

Name: NF11280A_low_197
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_197
NF11280A_low_197
[»] chr4 (4 HSPs)
chr4 (137-178)||(45088872-45088913)
chr4 (197-247)||(44668633-44668683)
chr4 (197-247)||(44687909-44687959)
chr4 (218-247)||(45095432-45095461)
[»] chr1 (4 HSPs)
chr1 (214-247)||(43986172-43986205)
chr1 (216-247)||(43983365-43983396)
chr1 (200-247)||(44004750-44004797)
chr1 (209-247)||(19567332-19567370)
[»] chr7 (1 HSPs)
chr7 (214-247)||(41688793-41688826)
[»] chr2 (1 HSPs)
chr2 (201-246)||(24002368-24002413)


Alignment Details
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 45088872 - 45088913
Alignment:
Q  137 tctcagcagaaggacaccgttttctgaaatgaacaaggcatc 178  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  45088872 tctcagcagaagaacaccgttttcagaaatgaacaaggcatc 45088913  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 44668633 - 44668683
Alignment:
Q  197 atcctgagggaagattgtcaatttagtccatgactcaacaactccatactc 247  Q
    |||||| |||| |||  ||| ||||||||||||||||||||||||||||||    
T  44668633 atcctgtgggatgatcatcagtttagtccatgactcaacaactccatactc 44668683  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 44687909 - 44687959
Alignment:
Q  197 atcctgagggaagattgtcaatttagtccatgactcaacaactccatactc 247  Q
    |||||| |||| |||  ||| ||||||||||||||||||||||||||||||    
T  44687909 atcctgtgggatgatcatcagtttagtccatgactcaacaactccatactc 44687959  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 45095432 - 45095461
Alignment:
Q  218 tttagtccatgactcaacaactccatactc 247  Q
    ||||||||||||||||||||||||||||||    
T  45095432 tttagtccatgactcaacaactccatactc 45095461  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 43986172 - 43986205
Alignment:
Q  214 tcaatttagtccatgactcaacaactccatactc 247  Q
    ||||||||||||||||||||||||||||||||||    
T  43986172 tcaatttagtccatgactcaacaactccatactc 43986205  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 247
Target Start/End: Original strand, 43983365 - 43983396
Alignment:
Q  216 aatttagtccatgactcaacaactccatactc 247  Q
    ||||||||||||||||||||||||||||||||    
T  43983365 aatttagtccatgactcaacaactccatactc 43983396  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 44004750 - 44004797
Alignment:
Q  200 ctgagggaagattgtcaatttagtccatgactcaacaactccatactc 247  Q
    |||||||| |||  |||||||||||||||||||| |||||||||||||    
T  44004750 ctgagggatgatcatcaatttagtccatgactcagcaactccatactc 44004797  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 19567332 - 19567370
Alignment:
Q  209 gattgtcaatttagtccatgactcaacaactccatactc 247  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  19567332 gattgtcaatatagtccatgactcagcaactccatactc 19567370  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 41688793 - 41688826
Alignment:
Q  214 tcaatttagtccatgactcaacaactccatactc 247  Q
    ||||||||||||||||||||||||||| ||||||    
T  41688793 tcaatttagtccatgactcaacaactctatactc 41688826  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 24002413 - 24002368
Alignment:
Q  201 tgagggaagattgtcaatttagtccatgactcaacaactccatact 246  Q
    ||||||| |||| ||||||| |||||||||||||||||||| ||||    
T  24002413 tgagggatgattttcaattttgtccatgactcaacaactccgtact 24002368  T

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