View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_198 (Length: 250)
Name: NF11280A_low_198
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_198 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 48673907 - 48673683
Alignment:
| Q |
13 |
agtcgaaattggattcttccaaatgattcatattaatggaagctctttaaccacttaaattcaatcatttagttgcaatgtataaatctaatccctcaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48673907 |
agtcgaaattggattcttccaaatgattcatattaatggaagctctttaaccacttaaattcaatcatttagttgcaatgtataaatctaatccctcaca |
48673808 |
T |
|
| Q |
113 |
nnnnnnn-gaaagaatttaatccctcacattattgatattctaaaaggatcctgaaattgcaacattttaatcaaacttgtccatgtgttgttatatgga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48673807 |
ttttttttgaaagaatttaatccctcacattattgatattctaaaaggatcctgaaattgcaacattttaatcaaacttgtccatgtgttgttatatgga |
48673708 |
T |
|
| Q |
212 |
ggataaatttgaaagtaagttaata |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48673707 |
ggataaatttgaaagtaagttaata |
48673683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 4156067 - 4156013
Alignment:
| Q |
140 |
attattgatattctaaaaggatc-ctgaaattgcaacattttaatcaaacttgtc |
193 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||| |||||||||||| ||||| |
|
|
| T |
4156067 |
attatggatattctaaaatgatctctgaaattgcaaaattttaatcaaatttgtc |
4156013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 40258868 - 40258808
Alignment:
| Q |
135 |
ctcacattattgatattctaaaaggatc-ctgaaattgcaacattttaatcaaacttgtcc |
194 |
Q |
| |
|
|||||||||| ||||||| |||| |||| |||||||| ||| |||||||||||| |||||| |
|
|
| T |
40258868 |
ctcacattatcgatattcaaaaatgatctctgaaattacaaaattttaatcaaatttgtcc |
40258808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 12241375 - 12241431
Alignment:
| Q |
132 |
tccctcacattattgatattctaaaaggatcct-gaaattgcaacattttaatcaaa |
187 |
Q |
| |
|
||||||||||||| |||||| ||||| ||| || |||||||||| |||||||||||| |
|
|
| T |
12241375 |
tccctcacattatcgatattttaaaatgattcttgaaattgcaaaattttaatcaaa |
12241431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University