View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_206 (Length: 250)
Name: NF11280A_low_206
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_206 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 31867595 - 31867828
Alignment:
| Q |
16 |
ttaatgggtatcatgttatcgagccaaatgtacaagcattagtattttgtttgatgattgatatttttatttatatttgtaaaacattaaatgactgcat |
115 |
Q |
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| T |
31867595 |
ttaatgggtatcatgttatcgagccaaatgtacaagcattagtattttgtttgatgattgatatttttatttatatttgtaaaacattaaatgactgcat |
31867694 |
T |
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| Q |
116 |
atcataaagttttaagaatctatatgatagatttggtttttgttacaagtacaattgaacttagtggagtttcctcatgatagcattcaggttttgggaa |
215 |
Q |
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| T |
31867695 |
atcataaagttttaagaatctatatgatagatttggtttttgttacaagtacaattgaacttagtggagtttcctcatgatagcattcaggttttgggaa |
31867794 |
T |
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| Q |
216 |
g--tttttcccgagttttcaatattcttcgacat |
247 |
Q |
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| T |
31867795 |
gtttttttcccgagttttcaattttcatcgacat |
31867828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 31858758 - 31858982
Alignment:
| Q |
22 |
ggtatcatgttatcgagccaaatgtacaagcattagtattttgtttgatgattgatatttttattt---atatttgtaaaacattaaatgactgcatatc |
118 |
Q |
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| T |
31858758 |
ggtatcatgttatcaagcccaatgtgcaagcattagtattttatttgatgattggtatttttattttttatattcgttaaacattaaatgactgcatatc |
31858857 |
T |
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| Q |
119 |
ataaagttttaagaatctatatgatagatttggtttttgttacaagtacaattgaacttagtggagtttcctcatgatagcattcaggttttgggaag-t |
217 |
Q |
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| T |
31858858 |
ataaa-ttttcagaatccatatgatagatttgctttt-gttgtaagtacaattgaacttagtggagtttcctcatgatagcattcaaggcttgggaagtt |
31858955 |
T |
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| Q |
218 |
ttttcccgagttttcaatattcttcga |
244 |
Q |
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| T |
31858956 |
ttttcccgagtttccaattttcatcga |
31858982 |
T |
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