View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_208 (Length: 249)
Name: NF11280A_low_208
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_208 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 24 - 249
Target Start/End: Original strand, 29447716 - 29447941
Alignment:
| Q |
24 |
actccaggcaaacaccaatggctgcaatcttcgtatagcgaagaagagttctgcttcattgatgtcttgtaatcttttcggtatactgaaggatgtccgt |
123 |
Q |
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| T |
29447716 |
actccaggcaaacaccaatggctgcaatcttcgtatagcgaagaagagttctgcttcattgatgtcttgtaatcttttcggtatactgaaggatgtccgt |
29447815 |
T |
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| Q |
124 |
cttttctgtaatctgtaagtctacttatgttcatatatatgacttcggttttcatattttggatgacatgctctagcgctcgcatttttgaaggatgctt |
223 |
Q |
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| T |
29447816 |
cttttctgtaatctgtaagtctacttatgttcatatatatgacttcggttttcatattttggatgacatgctctagcgctcgcatttttgaaggatgctt |
29447915 |
T |
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| Q |
224 |
ttgtaagtaagtttcattatatattg |
249 |
Q |
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| T |
29447916 |
ttgtaagtaagtttcattatatattg |
29447941 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 14584246 - 14584352
Alignment:
| Q |
86 |
tgtcttgtaatcttttcggtatactgaaggatgtccgtcttttctgtaatctgtaagtctacttatgttcatatatatgacttcggttttcatattttgg |
185 |
Q |
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| T |
14584246 |
tgtcttgtattccattctgtatattgatggatgggcgtcttttctgtaatctgtcatcctacttatgttcatataaataactggagttttcatctttggg |
14584345 |
T |
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| Q |
186 |
atgacat |
192 |
Q |
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| T |
14584346 |
atgacat |
14584352 |
T |
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