View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_21 (Length: 425)
Name: NF11280A_low_21
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_21 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 46844534 - 46844953
Alignment:
| Q |
1 |
gtctgtcttattacatcaaaggaaagtatgatttgctaatttgtgtccgattagaattagaacgattccttgaaggaatgatagtgaataccatgagatc |
100 |
Q |
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| T |
46844534 |
gtctgtcttattacatcaaaggaaagtataatttgctaatttgtgtccgattagaattagaccgattccttgaaggaatgatagtgaataccatgagatc |
46844633 |
T |
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| Q |
101 |
ttgaacctagttgcattattgcattgcaggggtgagatggcattttgcagccatgaatgccgtgaccagaggatgttgttggaggacgtgatgcctatat |
200 |
Q |
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| T |
46844634 |
ttgaacctagttgcattattgcattgcaggggtgagatggcattttgcagccatgaatgccgtgaccagaggatgttgttggaggacgtgatgcctatat |
46844733 |
T |
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| Q |
201 |
aacacaaaagatgcctaaattggaagctaacgatgattgagtatgtgacataattccacctaaacaaaaacaatttgacctttgcttcaatggacttaga |
300 |
Q |
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| T |
46844734 |
agcac--aagatgcctaaattggaagctaaggatgattgagtatgtgacataattccacctaaacaaaaacaatttgacctttgcttcaatggacttaga |
46844831 |
T |
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| Q |
301 |
atatgaaataatcctcagaaatcttatatcaaagtgcttgattttgatctctctgcttctcaacacatcctctctaaggtagcttcacaaaattttgaga |
400 |
Q |
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| T |
46844832 |
atatgaaataatcctcagaaatcttatatcaaagtgcttgattttgatctctctgcttctcaactcgacctctctaaggtagctgcacaaaattttgaga |
46844931 |
T |
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| Q |
401 |
ggaattaaaatgctgagatatt |
422 |
Q |
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| T |
46844932 |
ggaattaaaatgctgagatatt |
46844953 |
T |
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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 48986 - 48929
Alignment:
| Q |
129 |
ggggtgagatggcattttgcagccatgaatgccgtgaccagaggatgttgttggagga |
186 |
Q |
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| T |
48986 |
ggggtgagatggcattttgcaaccctgaatgccgtaaccagaggaaactgttggagga |
48929 |
T |
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