View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_210 (Length: 249)
Name: NF11280A_low_210
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_210 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 34043015 - 34042787
Alignment:
| Q |
1 |
aatattacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcattactcctcgaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34043015 |
aatattacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcatcactcctcgaga |
34042916 |
T |
|
| Q |
101 |
gctgaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaacacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042915 |
gctgaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaacacaa |
34042816 |
T |
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| Q |
201 |
agcgggagaagaatctaacacaacggaac |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34042815 |
agcgggagaagaatctaacacaacggaac |
34042787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 4046198 - 4046366
Alignment:
| Q |
1 |
aatattacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcattactcctcgaga |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
4046198 |
aatattacctccagattcaatttgtgctgcgatttgaaaagattgaaatagttcatcacaaggtacggaataaatgaatcaggatcatcactcctcgaga |
4046297 |
T |
|
| Q |
101 |
gctgaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataa |
169 |
Q |
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||||||||||||||||||||||||| |||| ||||||||| |||| |||||||| ||||||| |||| |
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| T |
4046298 |
actgaatgtaacaaaaaatcagcacagcaaccatatgattcagaaactaaatcaactacaaattgataa |
4046366 |
T |
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