View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_211 (Length: 249)
Name: NF11280A_low_211
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_211 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 5173130 - 5172905
Alignment:
| Q |
15 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaattta |
114 |
Q |
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| T |
5173130 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
5173031 |
T |
|
| Q |
115 |
ggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtca |
214 |
Q |
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|||||||| ||||||||||||||||||||||||||||| || || || |||| |||||||| |||||| ||||||||||||||||||||||| || | | |
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| T |
5173030 |
ggaaaccactttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataa |
5172931 |
T |
|
| Q |
215 |
atgaaaatgatccttgcatgtaattt |
240 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
5172930 |
gtgaaaatgatccttgcatgtaattt |
5172905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 5160213 - 5159980
Alignment:
| Q |
16 |
atcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
115 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5160213 |
atcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
5160114 |
T |
|
| Q |
116 |
gaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtcaa |
215 |
Q |
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| T |
5160113 |
gaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaa |
5160014 |
T |
|
| Q |
216 |
tgaaaatgatccttgcatgtaatttccaaagaag |
249 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| |
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| T |
5160013 |
tgaaaatgatccttgcatgtaatttccatagaag |
5159980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 4842395 - 4842620
Alignment:
| Q |
15 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaattta |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4842395 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
4842494 |
T |
|
| Q |
115 |
ggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtca |
214 |
Q |
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| T |
4842495 |
ggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaaattgataa |
4842594 |
T |
|
| Q |
215 |
atgaaaatgatccttgcatgtaattt |
240 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
4842595 |
gtgaaaatgatccttgcatgtaattt |
4842620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 5182464 - 5182228
Alignment:
| Q |
10 |
aagaatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaa |
109 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5182464 |
aagaatatcaaattatattgatatgaaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaattgaa |
5182365 |
T |
|
| Q |
110 |
atttaggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggt |
209 |
Q |
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|||| |||||||| ||||| ||||||||||||||| | ||||| ||| || | |||||||||||||||||| |||||||| |||||||||||||| || |
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| T |
5182364 |
atttgggaaaccactttgtcttttcagtttcaatgagaactcc---actgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagt |
5182268 |
T |
|
| Q |
210 |
ggtcaatgaaaatgatccttgcatgtaatttccaaagaag |
249 |
Q |
| |
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| |||||||||||||||||||||||||||||||| ||||| |
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| T |
5182267 |
gctcaatgaaaatgatccttgcatgtaatttccatagaag |
5182228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 4856867 - 4857097
Alignment:
| Q |
10 |
aagaatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaa |
109 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4856867 |
aagaataccaaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaattgaa |
4856966 |
T |
|
| Q |
110 |
atttaggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggt |
209 |
Q |
| |
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|||| |||||||| ||||| ||||||||||||||| | ||||| ||| || | |||||||||||||||||| |||||||| |||||||||||||| || |
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| T |
4856967 |
atttgggaaaccactttgtcttttcagtttcaatgagaactcc---actgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagt |
4857063 |
T |
|
| Q |
210 |
ggtcaatgaaaatgatccttgcatgtaatttcca |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4857064 |
ggtcaatgaaaatgatccttgcatgtaatttcca |
4857097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 5195853 - 5195622
Alignment:
| Q |
18 |
caaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttagga |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
5195853 |
caaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattgaaatttagga |
5195754 |
T |
|
| Q |
118 |
aaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtcaatg |
217 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| || | || || | ||||||||||||| | ||||||||| ||||||||||| ||| |||||| |
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|
| T |
5195753 |
aaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatg |
5195654 |
T |
|
| Q |
218 |
aaaatgatccttgcatgtaatttccaaagaag |
249 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
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| T |
5195653 |
aaaatgatccttgcatgtaatttccatagaag |
5195622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 5214021 - 5213790
Alignment:
| Q |
13 |
aatatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatt |
112 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
5214021 |
aatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaatt |
5213922 |
T |
|
| Q |
113 |
taggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggt |
212 |
Q |
| |
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| || ||||| ||||| |||||||||||||||| | | || | || |||| | ||||||||||||||| || |||||||||||||||||||| ||| | |
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| T |
5213921 |
tgggtaaccactttgtcttttcagtttcaatgtttgcaccaatgct-ttgt--gatgaaatatatagatgctggagattggagtgattagccaaagtgct |
5213825 |
T |
|
| Q |
213 |
caatgaaaatgatccttgcatgtaatttccaaaga |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5213824 |
caatgaaaatgatccttgcatgtaatttccaaaga |
5213790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 7142390 - 7142257
Alignment:
| Q |
18 |
caaattatattgataagaaagaaaagtaggaatgacacttcctttgtctttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttagga |
117 |
Q |
| |
|
|||||||| |||||| |||| |||| ||||||||||| |||||||||| ||||| ||||||||||| ||| || |||| | | ||||||| ||||| |
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| T |
7142390 |
caaattatgttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaatttttaa-cataagtgtatgtagttgaaatctagga |
7142292 |
T |
|
| Q |
118 |
aaccattttgttttttcagtttcaatgtgtactcc |
152 |
Q |
| |
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||||| ||||| ||||||||||||| ||||||||| |
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|
| T |
7142291 |
aaccactttgtattttcagtttcaacgtgtactcc |
7142257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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