View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_215 (Length: 248)

Name: NF11280A_low_215
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_215
NF11280A_low_215
[»] chr6 (16 HSPs)
chr6 (19-144)||(17095606-17095739)
chr6 (55-238)||(17066986-17067177)
chr6 (19-212)||(16870346-16870529)
chr6 (142-212)||(16558631-16558701)
chr6 (92-212)||(16655604-16655728)
chr6 (134-210)||(16984995-16985068)
chr6 (26-91)||(16985125-16985190)
chr6 (171-212)||(16784821-16784862)
chr6 (19-59)||(16794920-16794960)
chr6 (19-63)||(16841534-16841578)
chr6 (19-70)||(16975728-16975779)
chr6 (19-54)||(17067196-17067231)
chr6 (19-49)||(16655782-16655812)
chr6 (21-49)||(16558494-16558522)
chr6 (19-47)||(16778898-16778926)
chr6 (19-47)||(16784994-16785022)
[»] chr3 (2 HSPs)
chr3 (19-225)||(7055690-7055894)
chr3 (19-59)||(38941762-38941802)
[»] chr8 (1 HSPs)
chr8 (19-104)||(13375738-13375832)
[»] scaffold0133 (4 HSPs)
scaffold0133 (143-197)||(6069-6120)
scaffold0133 (19-59)||(10558-10598)
scaffold0133 (19-59)||(15855-15895)
scaffold0133 (19-47)||(6222-6250)
[»] scaffold0256 (1 HSPs)
scaffold0256 (19-47)||(6881-6909)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 17095739 - 17095606
Alignment:
Q  19 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa--------aatttaatgaatctcttta 110  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||        |||||||||||||||||||    
T  17095739 aagattggcattagatagctcacattcctgaatttgaattggaaactgatgcaaaaccaacatttcgtggtaatttaatttaatttaatgaatctcttta 17095640  T
Q  111 cttgttcatttatcttttgtcttactatatcaaa 144  Q
    ||||||||||||||||||||||||||||||||||    
T  17095639 cttgttcatttatcttttgtcttactatatcaaa 17095606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 55 - 238
Target Start/End: Complemental strand, 17067177 - 17066986
Alignment:
Q  55 aattggaatctgatgtaaaaccaacatttcgtggtaa---aatttaatgaatctctttacttgtt--catttatcttttgtcttactata---tcaaatt 146  Q
    ||||| ||||||||| |||||||||| || |||||||   ||||||| ||||||||| | || ||  | ||| | |||||||||||||||   | |||||    
T  17067177 aattgcaatctgatgcaaaaccaacaatttgtggtaatttaatttaacgaatctcttaattttttttcctttcttttttgtcttactatagaataaaatt 17067078  T
Q  147 atatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatggaatacggggaagcaattctggcaccgcc 238  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||| ||||| ||||||||    
T  17067077 atatactgtgattttagacttattatattgaacaatgtgtgcagagaatattaaatcagcatggaattgggggaagcgattcttgcaccgcc 17066986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 16870346 - 16870529
Alignment:
Q  19 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaaaatttaatgaatctctttacttgttca 118  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||  ||||||||||||| |||||  ||||||||       || |    |||     
T  16870346 aagattggcataagatagctcacattcctgaattttatttggaatctgataaaaaaccaacattttgtggt--aatttaat-------ttga----ttcc 16870432  T
Q  119 tttatcttttgtcttact---atatcaaattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatggaa 212  Q
    ||| |||||||| |||||   |||| |||||| || |||||||| |||||||||||||||||||||||||||| || ||||||| ||||||||||||    
T  16870433 tttgtcttttgtgttactataatataaaattagatggtgtgattatagacttattatattgaacaatgtgtgcagataatatcatatcagcatggaa 16870529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 16558631 - 16558701
Alignment:
Q  142 aaattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatggaa 212  Q
    |||||| || |||||||| |||||||||||||||||||||||||||| || ||||||| ||||||||||||    
T  16558631 aaattagatggtgtgattatagacttattatattgaacaatgtgtgcagataatatcatatcagcatggaa 16558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 16655728 - 16655604
Alignment:
Q  92 aatttaatgaatctctttacttg-ttcatttatcttttgtcttactata---tcaaattatatagtgtgattttagacttattatattgaacaatgtgtg 187  Q
    ||||||| ||||| ||||| ||| ||| ||| |||||||| ||||||||   |||||| | || |||||||| |||||||||||||||||||||||||||    
T  16655728 aatttaacgaatccctttatttgattcctttgtcttttgtgttactataatatcaaatcagatggtgtgattatagacttattatattgaacaatgtgtg 16655629  T
Q  188 ctgagaatatcaaatcagcatggaa 212  Q
    | || ||||||  ||||||||||||    
T  16655628 cagataatatcttatcagcatggaa 16655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 16985068 - 16984995
Alignment:
Q  134 actatatcaaattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatgg 210  Q
    ||||||||||||||||| ||||||||||||||   |||||||||||||| ||||| |||||||||| ||||||||||    
T  16985068 actatatcaaattatatggtgtgattttagac---ttatattgaacaatatgtgcagagaatatcatatcagcatgg 16984995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 16985190 - 16985125
Alignment:
Q  26 gcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa 91  Q
    |||||||||||||||||||||||||||| | || ||||||| || |||||||||||| | ||||||    
T  16985190 gcataagatagctcacattcctgaattttattttgaatctggtgcaaaaccaacattccctggtaa 16985125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 16784862 - 16784821
Alignment:
Q  171 atattgaacaatgtgtgctgagaatatcaaatcagcatggaa 212  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  16784862 atattaaacaatgtgtgcagagaatatcaaatcagcatggaa 16784821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 16794960 - 16794920
Alignment:
Q  19 aagattggcataagatagctcacattcctgaatttaaattg 59  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  16794960 aagattggcataagatagctcacgttcctgaatttgaattg 16794920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 16841578 - 16841534
Alignment:
Q  19 aagattggcataagatagctcacattcctgaatttaaattggaat 63  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||    
T  16841578 aagattggcataagatagctcacattcctagattgaaattggaat 16841534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 16975728 - 16975779
Alignment:
Q  19 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgt 70  Q
    |||||||| |||||| ||||||  ||||| ||||||||||||||||||||||    
T  16975728 aagattggtataagacagctcatgttcctaaatttaaattggaatctgatgt 16975779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 17067231 - 17067196
Alignment:
Q  19 aagattggcataagatagctcacattcctgaattta 54  Q
    ||||||||||||| ||||||||||||||||||||||    
T  17067231 aagattggcataaaatagctcacattcctgaattta 17067196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 16655812 - 16655782
Alignment:
Q  19 aagattggcataagatagctcacattcctga 49  Q
    |||||||||||||||||||||||||||||||    
T  16655812 aagattggcataagatagctcacattcctga 16655782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 16558494 - 16558522
Alignment:
Q  21 gattggcataagatagctcacattcctga 49  Q
    |||||||||||||||||||||||||||||    
T  16558494 gattggcataagatagctcacattcctga 16558522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 16778926 - 16778898
Alignment:
Q  19 aagattggcataagatagctcacattcct 47  Q
    |||||||||||||||||||||||||||||    
T  16778926 aagattggcataagatagctcacattcct 16778898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 16785022 - 16784994
Alignment:
Q  19 aagattggcataagatagctcacattcct 47  Q
    |||||||||||||||||||||||||||||    
T  16785022 aagattggcataagatagctcacattcct 16784994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 7055690 - 7055894
Alignment:
Q  19 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa---aatttaatgaatctcttta-cttg 114  Q
    |||||||||||||||||||||||||||| | ||| | |||||||||||||| |||| || ||||| |||||||   |||||||| |||| |||||  ||     
T  7055690 aagattggcataagatagctcacattccggcattgatattggaatctgatgcaaaaacatcattttgtggtaatttaatttaatcaatccctttatatta 7055789  T
Q  115 ttcatttatcttttgtcttactatatcaaattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatggaata 214  Q
    ||| ||| |||||| |||||||||||| |   ||||  | || || |||||   ||||||||||||||| |||| |||||||||| ||||||||| ||||    
T  7055790 ttcctttctcttttttcttactatatcca---atatgctatggttctagac---ttatattgaacaatgggtgcagagaatatcatatcagcatgcaata 7055883  T
Q  215 cggggaagcaa 225  Q
    | |||||||||    
T  7055884 cagggaagcaa 7055894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 38941762 - 38941802
Alignment:
Q  19 aagattggcataagatagctcacattcctgaatttaaattg 59  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  38941762 aagattggcataagatagctcacattcctgaatttgaattg 38941802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 13375832 - 13375738
Alignment:
Q  19 aagattggcataagatagctcacattcctgaatttaaattggaatc------tgatgtaaaaccaacatttcgtggtaa---aatttaatgaatc 104  Q
    |||||||| |||||||||||||||| |||||| || ||||||||||      ||||| ||||||||||||| |||||||   |||||||||||||    
T  13375832 aagattgggataagatagctcacatacctgaagttgaattggaatctaaatttgatgcaaaaccaacattttgtggtaatttaatttaatgaatc 13375738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 6120 - 6069
Alignment:
Q  143 aattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatat 197  Q
    |||||||| ||||||||||||||||||   |||||||||||||||| ||||||||    
T  6120 aattatatggtgtgattttagacttat---attgaacaatgtgtgcagagaatat 6069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 10598 - 10558
Alignment:
Q  19 aagattggcataagatagctcacattcctgaatttaaattg 59  Q
    |||||||||||||||||||||||||||||||| || |||||    
T  10598 aagattggcataagatagctcacattcctgaagttgaattg 10558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 15895 - 15855
Alignment:
Q  19 aagattggcataagatagctcacattcctgaatttaaattg 59  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  15895 aagattggcataagatagctcacattcctcaatttcaattg 15855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 6250 - 6222
Alignment:
Q  19 aagattggcataagatagctcacattcct 47  Q
    |||||||||||||||||||||||||||||    
T  6250 aagattggcataagatagctcacattcct 6222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 6909 - 6881
Alignment:
Q  19 aagattggcataagatagctcacattcct 47  Q
    |||||||||||||||||||||||||||||    
T  6909 aagattggcataagatagctcacattcct 6881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University