View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_218 (Length: 248)
Name: NF11280A_low_218
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_218 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 38567284 - 38567070
Alignment:
| Q |
21 |
ggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaata |
120 |
Q |
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| T |
38567284 |
ggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaata |
38567185 |
T |
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| Q |
121 |
gagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggagtctctcttcatataccgagcggaacaaccacagcattgg |
220 |
Q |
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| T |
38567184 |
gagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattgg |
38567085 |
T |
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| Q |
221 |
ttggacaaagtggaa |
235 |
Q |
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| T |
38567084 |
ttggacaaagtggaa |
38567070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 38526162 - 38525945
Alignment:
| Q |
18 |
tcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526162 |
tcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgag |
38526063 |
T |
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| Q |
118 |
atagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggagtctctcttcatataccgagcggaacaaccacagcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | |||||||||||| | |||| |
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| T |
38526062 |
atagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatattcaatggattctctcttcatatatcaagcggaacaaccgcggcat |
38525963 |
T |
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| Q |
218 |
tggttggacaaagtggaa |
235 |
Q |
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| T |
38525962 |
tggttggacaaagtggaa |
38525945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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