View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_219 (Length: 248)
Name: NF11280A_low_219
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_219 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 39182551 - 39182325
Alignment:
| Q |
15 |
atcgcggcaaaaatcttggaggttagactccacaagacttttgagttcttataggtttcaattctttgattttctagtagatgaaatagcaatgacttac |
114 |
Q |
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| T |
39182551 |
atcgcggcaaaaatcttggaggttagacttcacaagacttttgagttcttataggtttcaattctttgattttctagtagatgaaatagcaa-gacttac |
39182453 |
T |
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| Q |
115 |
agccaaagctgctttaaacaaacatctttcacttgtgtttggttgcaatggatacacaagttttaatgcatcctatattttcttttcttttcttgcagcc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |
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| T |
39182452 |
agccaaagctgctttaaacaaacatctttcacttgtgtttggttgcaatggatacacaagttttaatgcatcctatatttttttttttttttttgcagcc |
39182353 |
T |
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| Q |
215 |
ggcgaagttgaatattactactgatctg |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
39182352 |
ggcgaagttgaatattactactgatctg |
39182325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 2103088 - 2103243
Alignment:
| Q |
15 |
atcgcggcaaaaatcttggaggttagactccacaagactttt--gagttcttataggtttcaattctttgattttctagtagatgaaatagcaatgactt |
112 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2103088 |
atcgtggcaaaaatcttggaggttagacttcacaagacttttctgagttcttattggtttcaattctttgatttcctagtagatgaaatagcaatgactt |
2103187 |
T |
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| Q |
113 |
acagccaaagctgctttaaacaaacatctttcacttgtgtttggttgcaatggata |
168 |
Q |
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| T |
2103188 |
acagccaaagttgctttaaaaaaacatctttcacttgtgtttggttgcaatggata |
2103243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 2103302 - 2103370
Alignment:
| Q |
168 |
acacaagttttaatgcatcctatattttcttttcttttcttgcagccggcgaagttgaatattactactgat |
239 |
Q |
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|||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2103302 |
acacaagttttaatgcattctatatttt-ttttctttt--tgcagccggcgaagttgaatattactactgat |
2103370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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