View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_228 (Length: 245)
Name: NF11280A_low_228
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_228 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 6306688 - 6306842
Alignment:
| Q |
8 |
gagatgaacacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttga |
107 |
Q |
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| T |
6306688 |
gagaagaacacatgacataattaataagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgccgtcggtgaaagaaggatttga |
6306787 |
T |
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| Q |
108 |
attagctacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggtt |
162 |
Q |
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| T |
6306788 |
attagcgacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggtt |
6306842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 39538896 - 39539039
Alignment:
| Q |
15 |
acacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagct |
114 |
Q |
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| T |
39538896 |
acacatgacgtaattaacaagaagctaaacccaggtgaaaggatcgatgtgaatatctttggtggcaacgccgtcggtgaaagaaggatttgaattagcg |
39538995 |
T |
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| Q |
115 |
acggattcttcaggtcgagaagtgatactgaatgagtttgcttc |
158 |
Q |
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| T |
39538996 |
acggattcttcgggtggagaagtgataccgaatgagtttgcttc |
39539039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 20627 - 20773
Alignment:
| Q |
13 |
gaacacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattag |
112 |
Q |
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| T |
20627 |
gaacacatgacataattaacaagaagctaaatccaagcgaaaggatcgatgtgaatatctttggtggcgatgctgtcggtgaaagaaggatttgaattag |
20726 |
T |
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| Q |
113 |
ctacggattcttcaggtcgagaagtgatactgaatgagtttgcttcg |
159 |
Q |
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| T |
20727 |
cgacggattcttcgggtggagaagtgataccgaatgagtttgcttcg |
20773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 33809090 - 33809225
Alignment:
| Q |
24 |
ataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagctacggattct |
123 |
Q |
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| T |
33809090 |
ataattaacaagaagctaaacccaggtcaaaggatcgatgtgaatatcttttgtggcgacgccgtcggtgaaagaaggatttgaattagcgacgcattca |
33809189 |
T |
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| Q |
124 |
tcaggtcgagaagtgatactgaatgagtttgcttcg |
159 |
Q |
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| T |
33809190 |
tcgggtcgagaagtgataccgaatgagtttgcttcg |
33809225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 44257493 - 44257456
Alignment:
| Q |
8 |
gagatgaacacatgacataattaacaagaagctaaacc |
45 |
Q |
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| T |
44257493 |
gagaagaacacatgacataattaataagaagctaaacc |
44257456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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