View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_229 (Length: 244)

Name: NF11280A_low_229
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_229
NF11280A_low_229
[»] chr8 (4 HSPs)
chr8 (8-223)||(12200251-12200466)
chr8 (8-223)||(12444679-12444894)
chr8 (64-212)||(12195300-12195448)
chr8 (64-212)||(12439728-12439876)
[»] chr4 (21 HSPs)
chr4 (53-114)||(50669044-50669105)
chr4 (64-114)||(7908325-7908375)
chr4 (62-115)||(7237753-7237806)
chr4 (62-114)||(7877727-7877779)
chr4 (62-105)||(7771396-7771439)
chr4 (62-105)||(7790081-7790124)
chr4 (56-115)||(7813469-7813528)
chr4 (56-115)||(7822958-7823017)
chr4 (57-106)||(37827024-37827073)
chr4 (53-106)||(50250820-50250873)
chr4 (62-114)||(7773848-7773900)
chr4 (56-114)||(7765607-7765665)
chr4 (56-114)||(7786429-7786487)
chr4 (56-114)||(48852658-48852716)
chr4 (56-113)||(49048605-49048662)
chr4 (59-115)||(7800629-7800685)
chr4 (56-106)||(48170601-48170651)
chr4 (61-106)||(48147756-48147801)
chr4 (61-114)||(48898701-48898754)
chr4 (55-107)||(49044225-49044277)
chr4 (138-210)||(49048508-49048580)
[»] chr7 (1 HSPs)
chr7 (53-106)||(48883790-48883843)
[»] chr6 (2 HSPs)
chr6 (56-105)||(21979678-21979727)
chr6 (56-104)||(21015801-21015849)
[»] chr3 (2 HSPs)
chr3 (57-104)||(11005994-11006041)
chr3 (57-104)||(11024569-11024616)
[»] chr1 (2 HSPs)
chr1 (61-108)||(24310168-24310215)
chr1 (61-106)||(24367144-24367189)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 12200251 - 12200466
Alignment:
Q  8 tacctttgtctccttttgatttgaagttacatacattccatcgacatcatctatatggttttggttatgaccggtcaagagatgattacttggtggtttt 107  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12200251 tacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctatatggttttggttatgaccggtcaagagatgattacttggtggtttt 12200350  T
Q  108 attgtccctttgtccatcctttatgaaaacttcatcaaagttggaatttttctcattgagagataaaaagtggaatgaaattgaaggtcctcacatcact 207  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12200351 attgtccctttgtccagccttggtgaaaacttcatcaaagttggaatttttctcattgagagataacaagtggaatgaaattgaaggtcctcacatcact 12200450  T
Q  208 tattttaataccaggg 223  Q
    | ||||||||||||||    
T  12200451 tcttttaataccaggg 12200466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 12444679 - 12444894
Alignment:
Q  8 tacctttgtctccttttgatttgaagttacatacattccatcgacatcatctatatggttttggttatgaccggtcaagagatgattacttggtggtttt 107  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12444679 tacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctatatggttttggttatgaccggtcaagagatgattacttggtggtttt 12444778  T
Q  108 attgtccctttgtccatcctttatgaaaacttcatcaaagttggaatttttctcattgagagataaaaagtggaatgaaattgaaggtcctcacatcact 207  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12444779 attgtccctttgtccagccttggtgaaaacttcatcaaagttggaatttttctcattgagagataacaagtggaatgaaattgaaggtcctcacatcact 12444878  T
Q  208 tattttaataccaggg 223  Q
    | ||||||||||||||    
T  12444879 tcttttaataccaggg 12444894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 12195300 - 12195448
Alignment:
Q  64 ggttttggttatgaccggtcaagagatgattacttggtggttttattgtccctttgtccatcctttatgaaaacttcatcaaagttggaatttttctcat 163  Q
    ||||||||||||||| | | |||||||||||||||||| ||||||||||||  |  |||| ||||  |||||||||||||  | || |||||||||||||    
T  12195300 ggttttggttatgacggattaagagatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcat 12195399  T
Q  164 tgagagataaaaagtggaatgaaattgaaggtcctcacatcacttattt 212  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12195400 tgagagataataagtggaatgaaattgaaggtcctcacatcacttattt 12195448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 12439728 - 12439876
Alignment:
Q  64 ggttttggttatgaccggtcaagagatgattacttggtggttttattgtccctttgtccatcctttatgaaaacttcatcaaagttggaatttttctcat 163  Q
    ||||||||||||||| | | |||||||||||||||||| ||||||||||||  |  |||| ||||  |||||||||||||  | || |||||||||||||    
T  12439728 ggttttggttatgacggattaagagatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcat 12439827  T
Q  164 tgagagataaaaagtggaatgaaattgaaggtcctcacatcacttattt 212  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12439828 tgagagataataagtggaatgaaattgaaggtcctcacatcacttattt 12439876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 50669044 - 50669105
Alignment:
Q  53 atcatctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  50669044 atcatctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcc 50669105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 7908325 - 7908375
Alignment:
Q  64 ggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 114  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcc 7908375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 7237806 - 7237753
Alignment:
Q  62 atggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 115  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggttgtattttccc 7237753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 7877727 - 7877779
Alignment:
Q  62 atggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 114  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttcattgtcc 7877779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 7771396 - 7771439
Alignment:
Q  62 atggttttggttatgaccggtcaagagatgattacttggtggtt 105  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggtt 7771439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 7790081 - 7790124
Alignment:
Q  62 atggttttggttatgaccggtcaagagatgattacttggtggtt 105  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggtt 7790124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 7813469 - 7813528
Alignment:
Q  56 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 115  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||||| |||| ||||    
T  7813469 atctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttccc 7813528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 7822958 - 7823017
Alignment:
Q  56 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 115  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||||| |||| ||||    
T  7822958 atctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttccc 7823017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 37827073 - 37827024
Alignment:
Q  57 tctatatggttttggttatgaccggtcaagagatgattacttggtggttt 106  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  37827073 tctatatggttttggttatgaccagtctagagatgattacttggttgttt 37827024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 50250873 - 50250820
Alignment:
Q  53 atcatctatatggttttggttatgaccggtcaagagatgattacttggtggttt 106  Q
    |||||||||||||||||||||||||||  |||| ||||||||| ||||||||||    
T  50250873 atcatctatatggttttggttatgaccactcaacagatgattatttggtggttt 50250820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 7773900 - 7773848
Alignment:
Q  62 atggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 114  Q
    |||||||||||||||||| |  |||||||||||||||||||||| ||||||||    
T  7773900 atggttttggttatgaccaggtaagagatgattacttggtggttgtattgtcc 7773848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 7765607 - 7765665
Alignment:
Q  56 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 114  Q
    ||||||||||||||||||| || | ||| |||||||||||  |||||||||||||||||    
T  7765607 atctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc 7765665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 7786429 - 7786487
Alignment:
Q  56 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 114  Q
    ||||||||||||||||||| || | ||| |||||||||||  |||||||||||||||||    
T  7786429 atctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc 7786487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 48852658 - 48852716
Alignment:
Q  56 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 114  Q
    |||||||||||||||| ||||||| |||||  |||||||||||||| |||||| |||||    
T  48852658 atctatatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcc 48852716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 49048662 - 49048605
Alignment:
Q  56 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtc 113  Q
    |||||||||||||||| |||||||  |||| ||||||||| ||||||||| |||||||    
T  49048662 atctatatggttttgggtatgacccatcaacagatgattatttggtggttgtattgtc 49048605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 7800629 - 7800685
Alignment:
Q  59 tatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 115  Q
    ||||||||||||||||||||| |||||||||||| ||| || ||||| |||| ||||    
T  7800629 tatatggttttggttatgaccagtcaagagatgagtacgtgctggttgtattttccc 7800685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 48170651 - 48170601
Alignment:
Q  56 atctatatggttttggttatgaccggtcaagagatgattacttggtggttt 106  Q
    |||||||||||||||| ||||| | || ||||||||||||||| |||||||    
T  48170651 atctatatggttttgggtatgatcagttaagagatgattacttagtggttt 48170601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 48147801 - 48147756
Alignment:
Q  61 tatggttttggttatgaccggtcaagagatgattacttggtggttt 106  Q
    ||||||||||| ||||||| || || ||||||||||||||||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggttt 48147756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 48898701 - 48898754
Alignment:
Q  61 tatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 114  Q
    ||||||||||| ||||| | || || |||||||||||| |||||||||||||||    
T  48898701 tatggttttgggtatgatcagttaacagatgattacttagtggttttattgtcc 48898754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 49044277 - 49044225
Alignment:
Q  55 catctatatggttttggttatgaccggtcaagagatgattacttggtggtttt 107  Q
    ||||||||| ||||||| ||||| | ||||| ||||||||| |||||||||||    
T  49044277 catctatattgttttgggtatgatccgtcaacagatgattatttggtggtttt 49044225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 49048580 - 49048508
Alignment:
Q  138 ttcatcaaagttggaatttttctcattgagagataaaaagtggaatgaaattgaaggtcctcacatcacttat 210  Q
    ||||||| | ||||| |||||||| ||||||||||| |  ||||| |||||||| ||| |||||||| |||||    
T  49048580 ttcatcacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcacatcccttat 49048508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 48883790 - 48883843
Alignment:
Q  53 atcatctatatggttttggttatgaccggtcaagagatgattacttggtggttt 106  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  48883790 atcatctatatggttttggttatgacccgtcaagagatgattacatggtggttt 48883843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 21979727 - 21979678
Alignment:
Q  56 atctatatggttttggttatgaccggtcaagagatgattacttggtggtt 105  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  21979727 atctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 21015801 - 21015849
Alignment:
Q  56 atctatatggttttggttatgaccggtcaagagatgattacttggtggt 104  Q
    |||||||||||||||| |||||||  |||| ||||||||| ||||||||    
T  21015801 atctatatggttttgggtatgacccatcaacagatgattatttggtggt 21015849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 11006041 - 11005994
Alignment:
Q  57 tctatatggttttggttatgaccggtcaagagatgattacttggtggt 104  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  11006041 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 11005994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 11024616 - 11024569
Alignment:
Q  57 tctatatggttttggttatgaccggtcaagagatgattacttggtggt 104  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  11024616 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 11024569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 24310168 - 24310215
Alignment:
Q  61 tatggttttggttatgaccggtcaagagatgattacttggtggtttta 108  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  24310168 tatggttttggttatgacgagtcaagagatgattacttggtagtttta 24310215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 24367144 - 24367189
Alignment:
Q  61 tatggttttggttatgaccggtcaagagatgattacttggtggttt 106  Q
    ||||||||||| ||||||  ||||| ||||||||||||||||||||    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggttt 24367189  T

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