View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_230 (Length: 244)
Name: NF11280A_low_230
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_230 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 103 - 234
Target Start/End: Complemental strand, 4702590 - 4702459
Alignment:
| Q |
103 |
aaccttagtctgtaaataaaagaagtaatagcaaaatcaccagagactagtggtggtatataatgtaacacatattataatattcaatttaactttgatt |
202 |
Q |
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| T |
4702590 |
aaccttagtctgtaaataaaagaagcaatagcaaaatcaccagagactagtggtggtatataatgtaacacatattataatattcaatttaactttgatt |
4702491 |
T |
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| Q |
203 |
aatttgctctaacaaatcaaatgagagtataa |
234 |
Q |
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| T |
4702490 |
aatttgctctaacaaatcaaatgagagtataa |
4702459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 4702642 - 4702586
Alignment:
| Q |
21 |
catcgtatgatttaacaaattattcacaacaacaaaaattagcaaagcaacaaacct |
77 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4702642 |
catcttatgatttaacaaattattcacaacaacaaaaattagcaaagcaacaaacct |
4702586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 4705861 - 4705785
Alignment:
| Q |
107 |
ttagtctgtaaataaaagaagtaa-tagcaaaatcaccagagactagtggtggtatataatgtaacacatattataa |
182 |
Q |
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| T |
4705861 |
ttagtctataaatgaaagaagtaaatagcaaaatcaccagagattagtagcggtacataatgtaatagatattataa |
4705785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 4705973 - 4705890
Alignment:
| Q |
20 |
acatcgtatgatttaacaaat--tattcacaacaacaaaaattagcaaagcaacaaacctgcttaacaagttcaaatatgagga |
101 |
Q |
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| T |
4705973 |
acatcatatgatttatcaaatattgttaacaacaaaaaaaattatcagaggaacaaacatgtttaacaagttcaaatctgagga |
4705890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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