View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_232 (Length: 244)

Name: NF11280A_low_232
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_232
NF11280A_low_232
[»] chr5 (5 HSPs)
chr5 (17-183)||(32268817-32268983)
chr5 (49-207)||(41900158-41900316)
chr5 (151-223)||(32268755-32268825)
chr5 (57-132)||(41886271-41886346)
chr5 (150-199)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (139-206)||(15091347-15091414)
chr7 (141-203)||(10168806-10168868)
chr7 (141-203)||(10176331-10176393)
chr7 (78-119)||(10616209-10616250)
[»] chr4 (18 HSPs)
chr4 (145-206)||(2460597-2460658)
chr4 (127-200)||(2367656-2367729)
chr4 (145-194)||(2547544-2547593)
chr4 (148-200)||(2381378-2381430)
chr4 (146-206)||(6007665-6007725)
chr4 (142-200)||(566629-566687)
chr4 (147-200)||(2525763-2525816)
chr4 (149-194)||(12124836-12124881)
chr4 (149-194)||(12126892-12126937)
chr4 (141-206)||(55907434-55907499)
chr4 (148-200)||(2486313-2486365)
chr4 (148-200)||(5035628-5035680)
chr4 (160-206)||(1547469-1547515)
chr4 (142-192)||(2376228-2376278)
chr4 (148-186)||(2380123-2380161)
chr4 (145-194)||(2472104-2472153)
chr4 (139-179)||(8445271-8445311)
chr4 (159-199)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (139-206)||(513426-513493)
chr3 (141-192)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (140-200)||(14821628-14821688)
chr6 (148-200)||(6395781-6395833)
chr6 (148-196)||(6427432-6427480)
chr6 (160-194)||(6437161-6437195)
chr6 (158-200)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (141-200)||(32152212-32152271)
chr8 (148-194)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (141-206)||(1036176-1036241)
chr2 (141-194)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (151-200)||(15837967-15838016)
chr1 (141-200)||(33161439-33161498)
chr1 (148-192)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 32268983 - 32268817
Alignment:
Q  17 gaagaagaagaacattggggtccagtgatgaaaaaagaagaagaaaatcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaa 116  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32268983 gaagaagaagaacattgcggtccagtgatgcaaaaagaagaagaaaatcaatgatttctggttcatatttaccagatgagtgttgggaatgtgtcttcaa 32268884  T
Q  117 attcttgaaagacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268883 attcttgaaagacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatc 32268817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 41900158 - 41900316
Alignment:
Q  49 aaaagaagaagaaaatcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaat 148  Q
    |||| |||||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| | ||||  | ||||||||    
T  41900158 aaaaaaagaagaaaatcgataagttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagacgataatcactacttgaaat 41900257  T
Q  149 ctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctt 207  Q
    |||||||  |||||||||||||||| |||||||||||||||  ||||||||| ||||||    
T  41900258 ctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctctt 41900316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 32268825 - 32268755
Alignment:
Q  151 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctttcacagtctatgatcc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat--tctctctcacagtctatgatcc 32268755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 41886271 - 41886346
Alignment:
Q  57 aagaaaatcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaac 132  Q
    ||||||| ||||||||  |||||  ||| |||| |||||||||||||||||||||||||||||| |||||||||||    
T  41886271 aagaaaaacaatgattggtggtttctatttacctgatgagtgttgggaatgtgtcttcaaattcctgaaagacaac 41886346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 12846992 - 12846943
Alignment:
Q  150 tctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat 199  Q
    ||||||| |||| ||||| ||||| |||||||||||||||||||| ||||    
T  12846992 tctctccctcgtttccaagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 15091347 - 15091414
Alignment:
Q  139 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 206  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||| ||| |||||    
T  15091347 tgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctct 15091414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 10168806 - 10168868
Alignment:
Q  141 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 203  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10168868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 10176331 - 10176393
Alignment:
Q  141 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 203  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10176393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 10616250 - 10616209
Alignment:
Q  78 ttcatatctaccagatgagtgttgggaatgtgtcttcaaatt 119  Q
    ||||||| |||| |||||||||||||||||| ||||||||||    
T  10616250 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 2460658 - 2460597
Alignment:
Q  145 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 206  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  2460658 aaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctct 2460597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 2367656 - 2367729
Alignment:
Q  127 gacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 200  Q
    |||||||| || | |||| || |||| ||||||||||||||||| || |||||||||||||||||||| |||||    
T  2367656 gacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgatt 2367729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 2547593 - 2547544
Alignment:
Q  145 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 194  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  2547593 aaatcgctctccatcgtctccaaacagtttctgtccatcaccaaccgtct 2547544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 2381378 - 2381430
Alignment:
Q  148 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 200  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||| |||||    
T  2381378 tctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgatt 2381430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 6007725 - 6007665
Alignment:
Q  146 aatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 206  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| |||| ||||| |||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctct 6007665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 566687 - 566629
Alignment:
Q  142 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 200  Q
    ||||| ||||||||| | |||||||||||||| |||||||||||| || ||||||||||    
T  566687 ttgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgatt 566629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 2525816 - 2525763
Alignment:
Q  147 atctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 200  Q
    |||||||||| ||||||| |||||||| || |||||||||||| ||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgatt 2525763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 12124881 - 12124836
Alignment:
Q  149 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 194  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 12126937 - 12126892
Alignment:
Q  149 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 194  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 55907434 - 55907499
Alignment:
Q  141 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 206  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  55907434 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 55907499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 2486365 - 2486313
Alignment:
Q  148 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 200  Q
    ||||||||| ||||||| |||||||| || ||||||||||||||||| |||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgatt 2486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 5035680 - 5035628
Alignment:
Q  148 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 200  Q
    ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||    
T  5035680 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 5035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 1547469 - 1547515
Alignment:
Q  160 gtctccaaacagttactctccatcaccaaccgtcttcgattatctct 206  Q
    ||||||||||| || |||||||||||||||||||| ||||| |||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctctct 1547515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 2376228 - 2376278
Alignment:
Q  142 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 192  Q
    ||||| |||||||||||||||||||||   || ||||||||||||||||||    
T  2376228 ttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgt 2376278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 2380123 - 2380161
Alignment:
Q  148 tctctctccatcgtctccaaacagttactctccatcacc 186  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  2380123 tctctttccatcgtctccaaacagttactctcgatcacc 2380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 2472153 - 2472104
Alignment:
Q  145 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 194  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||| |||||    
T  2472153 aaatctctttccatggtctccaaacagtttttctccatcaccaatcgtct 2472104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 8445271 - 8445311
Alignment:
Q  139 tgcttgaaatctctctccatcgtctccaaacagttactctc 179  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  8445271 tgcttaaagtctctctccatcgtctcaaaacagttactctc 8445311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 12121009 - 12121049
Alignment:
Q  159 cgtctccaaacagttactctccatcaccaaccgtcttcgat 199  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  12121009 cgtctcaaagcagttcctctccatcaccaaccgtcttcgat 12121049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 513426 - 513493
Alignment:
Q  139 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 206  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||||||  ||| ||||| |||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 51763146 - 51763197
Alignment:
Q  141 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 192  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||| |||||    
T  51763146 cttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgt 51763197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 14821688 - 14821628
Alignment:
Q  140 gcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 200  Q
    ||||||||| ||||||| |||||||||| ||||| ||||| |||||||| |||||||||||    
T  14821688 gcttgaaatgtctctccctcgtctccaagcagttcctctctatcaccaatcgtcttcgatt 14821628  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 6395833 - 6395781
Alignment:
Q  148 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 200  Q
    ||||||||| |||||||||| ||||| |||||||||||||| | |||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgatt 6395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 6427480 - 6427432
Alignment:
Q  148 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttc 196  Q
    ||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  6427480 tctctctccctcgtctccaagcagttcctctccatcaccaatcgtcttc 6427432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 6437195 - 6437161
Alignment:
Q  160 gtctccaaacagttactctccatcaccaaccgtct 194  Q
    |||||||||||||| ||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtct 6437161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 7993319 - 7993361
Alignment:
Q  158 tcgtctccaaacagttactctccatcaccaaccgtcttcgatt 200  Q
    |||||||||||||||| ||||||||||||| |||||| |||||    
T  7993319 tcgtctccaaacagttcctctccatcaccagccgtctccgatt 7993361  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 32152271 - 32152212
Alignment:
Q  141 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 200  Q
    |||||| || |||||| |||||||||||||||| ||||||||||||||| |||| |||||    
T  32152271 cttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgatt 32152212  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 39516915 - 39516869
Alignment:
Q  148 tctctctccatcgtctccaaacagttactctccatcaccaaccgtct 194  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||||||    
T  39516915 tctctctccatcgtctccagacaatttctcgccatcaccaaccgtct 39516869  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 1036176 - 1036241
Alignment:
Q  141 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 206  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  1036176 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 1036241  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 44575177 - 44575230
Alignment:
Q  141 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 194  Q
    |||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  44575177 cttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtct 44575230  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 15837967 - 15838016
Alignment:
Q  151 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 200  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||    
T  15837967 ctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgatt 15838016  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 33161498 - 33161439
Alignment:
Q  141 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 200  Q
    |||||| ||||| ||| |||||||||||||||| ||||||||||| ||  ||||||||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgatt 33161439  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 52085600 - 52085556
Alignment:
Q  148 tctctctccatcgtctccaaacagttactctccatcaccaaccgt 192  Q
    ||||| ||||||||||||||| |||| || |||||||||||||||    
T  52085600 tctctttccatcgtctccaaaaagttcctttccatcaccaaccgt 52085556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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