View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_235 (Length: 244)
Name: NF11280A_low_235
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_235 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 11822028 - 11821844
Alignment:
| Q |
19 |
aaagtaccgtagcttgattcaaaaaaccaactgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaatttccggcacggtg |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11822028 |
aaagtaccttagcttgattcaaaaaaccaactgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaattcccggcacggtg |
11821929 |
T |
|
| Q |
119 |
aggaaatggcgttgcatcggccggaatctgagccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821928 |
aggaaatggcgttgcatcggccggaatctcagccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatc |
11821844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 11834337 - 11834520
Alignment:
| Q |
20 |
aagtaccgtagcttgattcaaaaaaccaactgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaatttccggcacggtga |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
11834337 |
aagtaccttagcttgattcaaaaaaccaactgttgcattaggtgatggatcatcccaattcactgaatattgaattttgaacaaatttccagcacggtga |
11834436 |
T |
|
| Q |
120 |
ggaaatggcgttgcatcggccggaatctgagccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
11834437 |
ggaaatggcgttgcatcggccggaatctcagcgatttttccaccataagggttgaaaacaaatccaatttttcctaactcaatc |
11834520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 12270777 - 12270810
Alignment:
| Q |
198 |
tcaatcgttggtagattgcaatcacatcacatat |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
12270777 |
tcaatcgttggtagattgcaatcacatcacatat |
12270810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University