View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_237 (Length: 243)

Name: NF11280A_low_237
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_237
NF11280A_low_237
[»] chr2 (4 HSPs)
chr2 (19-243)||(39934620-39934844)
chr2 (18-243)||(39695270-39695493)
chr2 (19-243)||(39704183-39704402)
chr2 (23-243)||(39928973-39929188)
[»] chr8 (1 HSPs)
chr8 (51-243)||(38061650-38061837)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 39934844 - 39934620
Alignment:
Q  19 ccatgttggcataagattaccggaaaatcacttatgccgctccagcgaatatgagcaggacatgtgttgactgttcttggcatggttgtctctgctcttg 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39934844 ccatgttggcataagattaccggcaaatcacttatgccgctccagcgaataggagcaggacatgtgttgactgttcttggcatggttgtctctgctcttg 39934745  T
Q  119 ttgaatcaaagagactcaaattagcacatgtgcatataatgtttccatgtccgtgttatggttttttccacaattagtgttggttggtattggagaagct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39934744 ttgaatcaaagagactcaaattagcacatgtgcatataatgtttccatgtccgtgttatggttttttccacaattagtgttggttggtattggagaagct 39934645  T
Q  219 tttcattttcctggacaagttacat 243  Q
    |||||||||||||||||||||||||    
T  39934644 tttcattttcctggacaagttacat 39934620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 39695270 - 39695493
Alignment:
Q  18 accatgttggcataagattacc-ggaaaatcacttatgccgctccagcgaatatgagcaggacatgtgttgactgttcttggcatggttgtctctgctct 116  Q
    |||| ||||||||||| ||||| |||||||  || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39695270 accaggttggcataaggttaccaggaaaatgcct-atgccgctccaacgaataggagcaggacatgtgttgactgttcttggcatggttgtctctgctct 39695368  T
Q  117 tgttgaatcaaagagactcaaattagcacatgtgcatataatgtttccatgtccgtgttatggttttttccacaattagtgttggttggtattggagaag 216  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||    
T  39695369 tgttgaatcaaagagactcaaattagtacatgtgc--ataatgtttccatgtctgtgttatggttgtttccacagttagtgttggttggtattggagaag 39695466  T
Q  217 cttttcattttcctggacaagttacat 243  Q
    |||||||||||||||||||||||||||    
T  39695467 cttttcattttcctggacaagttacat 39695493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 39704183 - 39704402
Alignment:
Q  19 ccatgttggcataagattaccggaaaatcacttatgccgctccagcgaatatgagcaggacatgtgttgactgttcttggcatggttgtctctgctcttg 118  Q
    |||||||||||||||||||| |||||| | | |||||| || || |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39704183 ccatgttggcataagattactggaaaaacgcctatgccacttcaacgaataggagtaggacatgtgttgactgttcttggcatggttgtctctgctcttg 39704282  T
Q  119 ttgaatcaaagagactcaaattagcacatgtgcatataatgtttccatgtccgtgttatggttttttccacaattagtgttggttggtattggagaagct 218  Q
    ||||||||||||| |||||||| | ||||||||     ||||    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39704283 ttgaatcaaagaggctcaaattggtacatgtgc-----atgtggaaatgtctgtgttatggttgtttccacaattagtgttggttggtattggagaagct 39704377  T
Q  219 tttcattttcctggacaagttacat 243  Q
    |||||||||||||||||||||||||    
T  39704378 tttcattttcctggacaagttacat 39704402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 39929188 - 39928973
Alignment:
Q  23 gttggcataagattaccggaaaatcacttatgccgctccagcgaatatgagcaggacatgtgttgactgttcttggcatggttgtctctgctcttgttga 122  Q
    ||||||||||| ||||| ||||||| | || || |||||| | |||| ||| |||||||||||| | ||||||||||||||| |||||||||||||||||    
T  39929188 gttggcataaggttaccagaaaatctcctaagctgctccatcaaataggagtaggacatgtgttcaatgttcttggcatggtggtctctgctcttgttga 39929089  T
Q  123 atcaaagagactcaaattagcacatgtgcatataatgtttccatgtccgtgttatggttttttccacaattagtgttggttggtattggagaagcttttc 222  Q
    ||| ||||||||||||||||| ||||     |  ||||||| ||||| || |||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  39929088 atcgaagagactcaaattagcgcatg-----aacatgtttcaatgtctgtattatggttgtttccacaattagtgttggttggtatcggagaagcgtttc 39928994  T
Q  223 attttcctggacaagttacat 243  Q
    |||||||||||||||||||||    
T  39928993 attttcctggacaagttacat 39928973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 243
Target Start/End: Complemental strand, 38061837 - 38061650
Alignment:
Q  51 tatgccgctccagcgaatatgagcaggacatgtgttgactgttcttggcatggttgtctctgctcttgttgaatcaaagagactcaaattagcacatgtg 150  Q
    |||||||||||| |||||| ||| |||  ||||||||||  |||| || ||||||||||| |||||||||||  |||| ||||||||||||||||||||     
T  38061837 tatgccgctccaacgaataggagtaggctatgtgttgaccattctgggtatggttgtctccgctcttgttgagacaaaaagactcaaattagcacatgtt 38061738  T
Q  151 catataatgtttccatgtccgtgttatggttttttccacaattagtgttggttggtattggagaagcttttcattttcctggacaagttacat 243  Q
    |||     ||    ||||| |||||||| || |||||||||||| || ||||  |||||||||||||||||||||||||||||||||||||||    
T  38061737 cat-----gtggaaatgtctgtgttatgtttgtttccacaattaatgctggtgagtattggagaagcttttcattttcctggacaagttacat 38061650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University