View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_239 (Length: 243)
Name: NF11280A_low_239
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_239 |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 37071339 - 37071133
Alignment:
| Q |
25 |
ccacccagaaagctcctcgttcatctgagcttgtgcctctttgtccaattcctcataccttgtcaaatcccttcttacagttcttaagaaaatgacaaaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37071339 |
ccacccagaaagctcctcgttcatctgagcttgtgcctctttgtccaattcctcataccttgtcaaatcccttcttacagttcttaagaaaatgacaaaa |
37071240 |
T |
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| Q |
125 |
acaatgccagcaaggaaaataataaccatcagtgaatttaggattgagaaccaatgaactcgagaaccctccatcttcaaataagcatcccaacgtgatg |
224 |
Q |
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| T |
37071239 |
acaatgccagcaaggaaaataataaccatcagtgaatttaggattgagaaccaatgaactcgagaaccctccatcttcaaataagcatcccaacgtgatg |
37071140 |
T |
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| Q |
225 |
tccatct |
231 |
Q |
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|||||| |
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| T |
37071139 |
gccatct |
37071133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 43219435 - 43219625
Alignment:
| Q |
29 |
ccagaaagctcctcgttcatctgagcttgtgcctctttgtccaattcctcataccttgtcaaatcccttcttacagttcttaagaaaatgacaaaaacaa |
128 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| || ||||||||||||||||||||||||| |
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| T |
43219435 |
ccagaaagctcctcattcatctgagcttgtgtctctttgtccaattcctcataccttgccaagtcccttctcactgttcttaagaaaatgacaaaaacaa |
43219534 |
T |
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| Q |
129 |
tgccagcaaggaaaataataaccatcagtgaatttaggattgagaaccaatgaactcgagaaccctccatcttcaaataagcatcccaacg |
219 |
Q |
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| T |
43219535 |
taccagctagaaaaaagatcaccatcagtgaatttagaatcgagaaccaatgcacccgggaaccctccatcttcaaataagcatcccaacg |
43219625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 347 - 222
Alignment:
| Q |
91 |
atcccttcttacagttcttaagaaaatgacaaaaacaatgccagcaaggaaaataataaccatcagtgaatttaggattgagaaccaatgaactcgagaa |
190 |
Q |
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|||||| || |||||||| ||||| || |||| |||||| |||||||||||| | || ||||||| ||||| ||||| ||||||||||| ||| | |
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| T |
347 |
atccctcctaacagttctcaagaagataacaagaacaataccagcaaggaaagtgatcaccatcaacgaattgaggatcgagaaccaatggactttggct |
248 |
T |
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| Q |
191 |
ccctccatcttcaaataagcatccca |
216 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
247 |
ccctccatcttcaagtaagcatccca |
222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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