View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_247 (Length: 241)
Name: NF11280A_low_247
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_247 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 78 - 230
Target Start/End: Complemental strand, 25933416 - 25933261
Alignment:
| Q |
78 |
ttgtatgttaaattaatcatttttcaagaacaaacc---attattgtgttttgatgttaactttctgatttttagagaaagggcgttcaacttagtttaa |
174 |
Q |
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| T |
25933416 |
ttgtatgttaaattaatcatttttcaagaacaaaccgtaattattgtattttgatgttaactttctgattttcagagaaagggcgttcaacttagtttaa |
25933317 |
T |
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| Q |
175 |
taaaaacgacaacaatcaaacattattccatctccttgactatgagacggatattt |
230 |
Q |
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| T |
25933316 |
taaaaacgacaacaatcaaacattattccatctccttgactatgagacggatattt |
25933261 |
T |
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