View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_248 (Length: 240)
Name: NF11280A_low_248
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_248 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 42071871 - 42072077
Alignment:
| Q |
16 |
gtgtctgtgtcaatgcttcatagttgtttacattgttgtatgtgtgtgatgcagatgatgacacagaagtggatgattctcctgtagagcaagtcagact |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42071871 |
gtgtctgtgtcaatgcttcatagttgtttacattgttgtatgtgtgtgatgcagatgatgacacagaagtggatgattctcctatagagcaagtcagact |
42071970 |
T |
|
| Q |
116 |
aacagtgtcaataacagacgaccctacacaaccagcactaacatttaggacatgggttattggttttgtgtcttgcattgcccttgcctttgtgaaccaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42071971 |
aacagtgtcaataacagacgaccctacacaaccagcactaacatttaggacatgggttattggttttgtgtcttgcattgcccttgcctttgtgaaccaa |
42072070 |
T |
|
| Q |
216 |
ttctttg |
222 |
Q |
| |
|
||||||| |
|
|
| T |
42072071 |
ttctttg |
42072077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 42055715 - 42055875
Alignment:
| Q |
62 |
tgatgcagatgatgacacagaagtggatgattctcctgtagagcaagtcagactaacagtgtcaataacagacgaccctacacaaccagcactaacattt |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |
|
|
| T |
42055715 |
tgatgcagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgacccaacacaaccagcactgacattt |
42055814 |
T |
|
| Q |
162 |
aggacatgggttattggttttgtgtcttgcattgcccttgcctttgtgaaccaattctttg |
222 |
Q |
| |
|
||||||||| |||||||||| | | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
42055815 |
aggacatggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttg |
42055875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 42080865 - 42081025
Alignment:
| Q |
62 |
tgatgcagatgatgacacagaagtggatgattctcctgtagagcaagtcagactaacagtgtcaataacagacgaccctacacaaccagcactaacattt |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |
|
|
| T |
42080865 |
tgatgcagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgacccaacacaaccagcactgacattt |
42080964 |
T |
|
| Q |
162 |
aggacatgggttattggttttgtgtcttgcattgcccttgcctttgtgaaccaattctttg |
222 |
Q |
| |
|
||||||||| |||||||||| | | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
42080965 |
aggacatggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttg |
42081025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University