View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_249 (Length: 239)
Name: NF11280A_low_249
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_249 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 23915348 - 23915210
Alignment:
| Q |
16 |
aagaatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgagtgaagtccttnnnnnnnnggtactgcatcataatgccta |
115 |
Q |
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| T |
23915348 |
aagaatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgagtgaagtccttaaaaaaaaggtactgcattataatgccta |
23915249 |
T |
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| Q |
116 |
taaattaagaaccctaagtaacgtctcttcttcattctcctca |
158 |
Q |
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| T |
23915248 |
taaattaagaaccc----taacgtctattctccattctcctca |
23915210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 23915185 - 23915125
Alignment:
| Q |
160 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat |
220 |
Q |
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| T |
23915185 |
aagagaaaatggcatcttcaacctatttatccattttgctcaccatttcaatgatctttat |
23915125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 23922834 - 23922776
Alignment:
| Q |
160 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatcttt |
218 |
Q |
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| T |
23922834 |
aagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatcttt |
23922776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 23922935 - 23922872
Alignment:
| Q |
95 |
ggtactgcatcataatgcctataaattaagaaccctaagtaacgtctcttcttcattctcctca |
158 |
Q |
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| T |
23922935 |
ggtactacattataatgcctatatattaagaaccctaagtaacgtctcttctccactctcctca |
23922872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 23923014 - 23922954
Alignment:
| Q |
16 |
aagaatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgag |
76 |
Q |
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||||||||||||||||| | |||| |||||||||||||||||| ||| ||||||| |||| |
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| T |
23923014 |
aagaatattaatggtgactttatttgtttctgactacattcattaactcattttgattgag |
23922954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 25803278 - 25803226
Alignment:
| Q |
168 |
atggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat |
220 |
Q |
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| T |
25803278 |
atggcaccttcaacatatttatcatttttgctcaccatttcaatgatgtttat |
25803226 |
T |
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