View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_252 (Length: 239)
Name: NF11280A_low_252
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_252 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 107261 - 107465
Alignment:
| Q |
20 |
tgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatcatgatgtcaaagaccctcaggctgagttgattgatcctgcactcaacgggact |
119 |
Q |
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| T |
107261 |
tgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatcatcatgtcaaagaccctcaggctgagttgattgatcctgcactcaacgggact |
107360 |
T |
|
| Q |
120 |
ctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactc |
219 |
Q |
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| T |
107361 |
ctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactc |
107460 |
T |
|
| Q |
220 |
ctgat |
224 |
Q |
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||||| |
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| T |
107461 |
ctgat |
107465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 87894 - 88101
Alignment:
| Q |
17 |
tgttgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatcatgatgtcaaagaccctcaggctgagttgattgatcctgcactcaacggg |
116 |
Q |
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| T |
87894 |
tgttgttcaaggctgtcatggtgtctttcacactgcatctcccttttatcatgatgtcaaggatcctcaggctgaattgattgatcctgctctcaaaggg |
87993 |
T |
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| Q |
117 |
actctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaa |
216 |
Q |
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| T |
87994 |
actctcaatgttctcaactcatgtgctaaatccccatcactcaaacgtgttgttttaacttcttctattgctgctgttgcttataatgggaagcctcgaa |
88093 |
T |
|
| Q |
217 |
ctcctgat |
224 |
Q |
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|||||||| |
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| T |
88094 |
ctcctgat |
88101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 2707050 - 2707155
Alignment:
| Q |
114 |
gggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctc |
213 |
Q |
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|||||||| ||||| || ||||||||||| |||| |||| || ||||||||||| |||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
2707050 |
gggactctaaatgtgctgaaatcatgtgcaaaatttccatctctgaaacgtgttgtattaacctcttctatcgctgcggttgcgtacaataaaaagcctc |
2707149 |
T |
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| Q |
214 |
gaactc |
219 |
Q |
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||||| |
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| T |
2707150 |
aaactc |
2707155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 92 - 224
Target Start/End: Complemental strand, 44784893 - 44784761
Alignment:
| Q |
92 |
gttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgct |
191 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||| |||||| |
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| T |
44784893 |
gttgattgatcctgcgctcaaagggactctcaatgttctcaactcatgtgcaaaatccccatcactcaaacgtgttgtcttaacatcttctgtcgctgct |
44784794 |
T |
|
| Q |
192 |
gttgcgtacaatgaaaagcctcgaactcctgat |
224 |
Q |
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||||| ||||||| ||||||||||||||||||| |
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| T |
44784793 |
gttgcatacaatggaaagcctcgaactcctgat |
44784761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 25934237 - 25934307
Alignment:
| Q |
83 |
tcaggctgagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccat |
153 |
Q |
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| T |
25934237 |
tcaggctgagttgattgatccggcactgaagggaactcttaatgttcttcaatcatgtgcaaaatcaccat |
25934307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 26101881 - 26101933
Alignment:
| Q |
90 |
gagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgc |
142 |
Q |
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| T |
26101881 |
gagttgattgatccggcacttaagggaactcttaatgttcttaaatcatgtgc |
26101933 |
T |
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