View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_258 (Length: 237)
Name: NF11280A_low_258
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_258 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 37704454 - 37704657
Alignment:
| Q |
20 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
37704553 |
T |
|
| Q |
120 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattaacac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37704554 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac |
37704653 |
T |
|
| Q |
220 |
gaaa |
223 |
Q |
| |
|
|||| |
|
|
| T |
37704654 |
gaaa |
37704657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 37698974 - 37699171
Alignment:
| Q |
21 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgaca |
118 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgaca |
37699073 |
T |
|
| Q |
119 |
tttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaatta |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||||| |
|
|
| T |
37699074 |
tttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaatta |
37699171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 37437520 - 37437715
Alignment:
| Q |
20 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
119 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| |||||| ||||||||| |||| | ||||| |||||||||||| | |||| |||||||||| |
|
|
| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaa |
37437618 |
T |
|
| Q |
120 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaatta |
215 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || ||||||| |||||||| ||||||||||| |
|
|
| T |
37437619 |
ttggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaatta |
37437715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 37698636 - 37698697
Alignment:
| Q |
20 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgtt |
81 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgtt |
37698697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 37698703 - 37698808
Alignment:
| Q |
104 |
tatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agacttt |
202 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| | |||||| ||||||||||||||| ||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
37698703 |
tatagtgatatgacaattggcaacaatattaa--------caatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttt |
37698794 |
T |
|
| Q |
203 |
ttgaacgtaattaa |
216 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
37698795 |
tttaacgtaattaa |
37698808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 16841109 - 16841041
Alignment:
| Q |
148 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaatta |
215 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaatta |
16841041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University