View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_259 (Length: 235)
Name: NF11280A_low_259
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_259 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 1164461 - 1164336
Alignment:
| Q |
21 |
attaggtcagaaagtgtcgaagatggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggag |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1164461 |
attaggtcagaaagtgtcgaagatggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggag |
1164362 |
T |
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| Q |
121 |
caggtcagcgttcggacccaacttgg |
146 |
Q |
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| T |
1164361 |
caggtcagcgtttggaaccatcttgg |
1164336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 1849313 - 1849416
Alignment:
| Q |
29 |
agaaagtgtcgaagatggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcag |
128 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1849313 |
agaaagtgtcgaagatggaggaagggttttgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcag |
1849412 |
T |
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| Q |
129 |
cgtt |
132 |
Q |
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|||| |
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| T |
1849413 |
cgtt |
1849416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 38987024 - 38987135
Alignment:
| Q |
21 |
attaggtcagaaagtgtcgaagatggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggag |
120 |
Q |
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| T |
38987024 |
attaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggag |
38987123 |
T |
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| Q |
121 |
caggtcagcgtt |
132 |
Q |
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||| |||||||| |
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| T |
38987124 |
cagatcagcgtt |
38987135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 39725746 - 39725857
Alignment:
| Q |
21 |
attaggtcagaaagtgtcgaagatggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggag |
120 |
Q |
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||||||||| |||||| |||||||||| |||| |||||| |||||||||| ||||||||||||||||||||| |||| |||||| | |||||||||||| |
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| T |
39725746 |
attaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggag |
39725845 |
T |
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| Q |
121 |
caggtcagcgtt |
132 |
Q |
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||| |||||||| |
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| T |
39725846 |
cagatcagcgtt |
39725857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 3298832 - 3298930
Alignment:
| Q |
40 |
aagatggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgttcggacc |
138 |
Q |
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|||||||||||||| ||| || |||| |||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |||||||| ||||| |
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| T |
3298832 |
aagatggaggaagggtgggttggtgttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggacc |
3298930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 3391725 - 3391823
Alignment:
| Q |
40 |
aagatggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgttcggacc |
138 |
Q |
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|||||||||||||| ||| || |||| |||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |||||||| ||||| |
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| T |
3391725 |
aagatggaggaagggtgggttggtgttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggacc |
3391823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 39879188 - 39879257
Alignment:
| Q |
63 |
tgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtt |
132 |
Q |
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||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||| |||||||| |
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| T |
39879188 |
tgttgtgaatgttcgtcaacaacatgtttgtcagctgcgtactttctttcatttggagcagatcagcgtt |
39879257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 40411893 - 40411962
Alignment:
| Q |
63 |
tgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtt |
132 |
Q |
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||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||| |||||||| |
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| T |
40411893 |
tgttgtgaatgttcgtcaacaacatgtttgtcagctgcgtactttctttcatttggagcagatcagcgtt |
40411962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 25913059 - 25912945
Alignment:
| Q |
20 |
tattaggtcagaaagtgtcgaagatggaggaaggatggcgtgctgttgtgaatgttc--gtcaacaacatgtttctgaactgcgtactttgtttcatttg |
117 |
Q |
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|||||||||| ||| || ||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||| |
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| T |
25913059 |
tattaggtcaaaaaatgaagaagatggaggaagggtggcgctctgttgtgaatgttctcgtcaacaacatgtttgtcaactgcgtactttctttcatttg |
25912960 |
T |
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| Q |
118 |
gagcaggtcagcgtt |
132 |
Q |
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|||||| |||||||| |
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| T |
25912959 |
gagcagatcagcgtt |
25912945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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