View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_262 (Length: 235)
Name: NF11280A_low_262
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_262 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 50580468 - 50580331
Alignment:
| Q |
20 |
ggagttggttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaataccgtattcactct |
119 |
Q |
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| T |
50580468 |
ggagttggttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaataccgtattcactct |
50580369 |
T |
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| Q |
120 |
aaatccagctttagaacaaacaaggtatgtagtataat |
157 |
Q |
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| T |
50580368 |
aaatccacctttagaacaaacaaggtatgtagtataat |
50580331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 11462987 - 11462908
Alignment:
| Q |
27 |
gttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaata |
106 |
Q |
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| T |
11462987 |
gttggaatgaagaaaactcttgttttctacaaaggaagagcacctaaaggagagaaaagtaattgggtaatgcatgaata |
11462908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 1059333 - 1059453
Alignment:
| Q |
27 |
gttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaataccgtattcactctaaatcca |
126 |
Q |
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| T |
1059333 |
gttggtatgaagaagactttggttttttacaaaggtcgggctcctagaggagagaaaaccaactgggttatgcatgaataccgtatccattccaaatcca |
1059432 |
T |
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| Q |
127 |
gctttagaacaaacaaggtat |
147 |
Q |
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| T |
1059433 |
gtattagaaccaacaaggtat |
1059453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 45058993 - 45059076
Alignment:
| Q |
23 |
gttggttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaata |
106 |
Q |
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| T |
45058993 |
gttggttggtatgaagaaaactcttgttttctacaaaggaagagcacctaaaggagaaaaaagtaattgggtcatgcatgaata |
45059076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 3893374 - 3893451
Alignment:
| Q |
28 |
ttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaat |
105 |
Q |
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| T |
3893374 |
ttggaatgaagaaaacacttgttttctacaaaggaagagctcctaaaggtgaaaaaacaaattgggtcatgcatgaat |
3893451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 10317671 - 10317623
Alignment:
| Q |
57 |
aaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaat |
105 |
Q |
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| T |
10317671 |
aaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaat |
10317623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 106
Target Start/End: Complemental strand, 31606050 - 31606022
Alignment:
| Q |
78 |
gagaaaagtaattgggtcatgcatgaata |
106 |
Q |
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| T |
31606050 |
gagaaaagtaattgggtcatgcatgaata |
31606022 |
T |
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