View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_273 (Length: 230)
Name: NF11280A_low_273
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_273 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5145491 - 5145268
Alignment:
| Q |
1 |
tatgttttggcaatattacaaacaatgattggggttacaatgttgtcataaacaaaattgaagggctttcatttcatgtttttagtattgtgccccctta |
100 |
Q |
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| T |
5145491 |
tatgttttggcaatattacaaacaatgattggggttacaatgttgtcataaacaaaattgaagggctttcatttcatgtttttagtattgtgccccctta |
5145392 |
T |
|
| Q |
101 |
atagtgattactttgtgttgtgttccctaatgctgaaatgtcatcgattgcatcaatcagatcgttctacctcaattagagaccaaattctattgttgtt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5145391 |
atagtgattactttgtattgtgttccctaatgctgaaatgtcatcgattgcatcaatcagatcgttctacctcaattagagaccaaattctattgttgtt |
5145292 |
T |
|
| Q |
201 |
tgctttgatgggaatagatggggt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
5145291 |
tgctttgatgggaatagatggggt |
5145268 |
T |
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