View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_278 (Length: 230)
Name: NF11280A_low_278
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_278 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13887941 - 13887718
Alignment:
| Q |
1 |
atcaatgaataaaaaagtgtccaaatagctaaaattaaacttttattacctctttatgatccataggaacagaaggatacaatctaagagtttctgaaag |
100 |
Q |
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| T |
13887941 |
atcaatgaataaaaaagtaaccaaatagctaaaattaaacttttattacctctttatgatccataggaacagaaggatacaatctaagagtttctgaaag |
13887842 |
T |
|
| Q |
101 |
agcagcatgcaaataatccatcttcttaatctcctcaggtttgaatcttaaagaatcattaaacacttccttattaatattaatatcctccctttgactc |
200 |
Q |
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| T |
13887841 |
agcagcatgcaaataacccatcttcttaatctcctcaggtttgaatcttaaagaatcattaaacacttccttattaatattaatatcctccctttgactc |
13887742 |
T |
|
| Q |
201 |
acaaccctgcaaatctcttctaat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
13887741 |
acaaccctgcaaatctcttctaat |
13887718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 13897297 - 13897492
Alignment:
| Q |
23 |
aaatagctaaaattaaacttttattacctctttatgatccataggaacagaaggatacaatctaagagtttctgaaagagcagcatgcaaataatccatc |
122 |
Q |
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| T |
13897297 |
aaatatctaaaattgaacagttattacctccttacaatccacaggaacagaaggatataatctaagagcttctgaaagagctgcatgcaaataatccatc |
13897396 |
T |
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| Q |
123 |
ttcttaatctcctcaggtttgaatcttaaagaatcattaaacacttccttattaatattaatatcctccctttgactcacaaccctgcaaatctcttcta |
222 |
Q |
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| T |
13897397 |
ttcttaatctcctcaggcttgaatctcaaagaatcattaaacacttcct------tattaatatcctccctttgacacacaaccctgcaaatctcttcta |
13897490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 1034388 - 1034478
Alignment:
| Q |
45 |
attacctctttatgatccataggaacagaaggatacaatctaagagtttctgaaagagcagcatgcaaataatccatcttcttaatctcct |
135 |
Q |
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|||||||| ||| |||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034388 |
attacctccttacgatccacaggcacagaagggtacaatctaagagcttctgaaagagcagcatgcaaataatccatcttcttaatctcct |
1034478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 28666656 - 28666750
Alignment:
| Q |
45 |
attacctctttatgatccataggaacagaaggatacaatctaagagtttctgaaagagcagcatgcaaataatccatcttcttaatctcctcagg |
139 |
Q |
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| T |
28666656 |
attacctccttgtgatcaacaggaacagaaggatataatctgagagtttcagataaacaagcatgcaaatagtccatcttttttatctcttcagg |
28666750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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