View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_283 (Length: 230)
Name: NF11280A_low_283
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_283 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 5195637 - 5195424
Alignment:
| Q |
1 |
gtaatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctg |
100 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||||| | ||| |||||||||||| |
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| T |
5195637 |
gtaatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaaatttccactgaacagattattactaagttcaagaactctg |
5195538 |
T |
|
| Q |
101 |
aggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaa |
200 |
Q |
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||||||||||||||||||||||| || |||||||||||| ||||||||| |||||||| ||||||||||||||| |||| ||| ||||||||||||| | |
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| T |
5195537 |
aggtttgttaagttgcttaaacaatctggaagtttagcactaaacatgtttttgctgatatccagttctaccaaatccttaaaattgcatagtcctgtca |
5195438 |
T |
|
| Q |
201 |
taattaactatgtc |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
5195437 |
taattaactatgtc |
5195424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 5159995 - 5159789
Alignment:
| Q |
1 |
gtaatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||| || |||| |||||||| |||||| ||||||||||||| | ||| |||||||||||| |
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| T |
5159995 |
gtaatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaactttccactgaacagattattactaagttcaagaactctg |
5159896 |
T |
|
| Q |
101 |
aggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaa |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||||| | |||||| ||||||||||||||| |||||||| ||||||||||||| | |
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| T |
5159895 |
aggtttgttaagttgcttaaacactcaggaaatttagcactaaacatgttctggctgatatccagttctaccaaatccttcaaattgcatagtcctgtca |
5159796 |
T |
|
| Q |
201 |
taattaa |
207 |
Q |
| |
|
||||||| |
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|
| T |
5159795 |
taattaa |
5159789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 5182243 - 5182037
Alignment:
| Q |
1 |
gtaatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||||| | ||| ||||||||||| |
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| T |
5182243 |
gtaatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaaatttccactgaacagattattactaagttcaagaactcta |
5182144 |
T |
|
| Q |
101 |
aggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| |||| |||||||||| |||||||| ||||||||||||| | |
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|
| T |
5182143 |
aggtttgttaagttgcttaaacactctggaagtttagcactaaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcctgtca |
5182044 |
T |
|
| Q |
201 |
taattaa |
207 |
Q |
| |
|
||||||| |
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|
| T |
5182043 |
taattaa |
5182037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 4842630 - 4842827
Alignment:
| Q |
17 |
gataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgc |
116 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||| | |
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|
| T |
4842630 |
gataagaatgtcaaggatgtgagattggtagtgaaggatggaaaatttccaccgaacagattatggctaaggtcaagaattctgaggtttgttaagttac |
4842729 |
T |
|
| Q |
117 |
ttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaataattaactatgtc |
214 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
4842730 |
ttaaacactcaggaagtttagccccaaacatgtttttgctgatatccagttcttccaaatccttcaaattgcatagtcctgtcataattaactatgtc |
4842827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 5172895 - 5172698
Alignment:
| Q |
17 |
gataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgc |
116 |
Q |
| |
|
|||||| ||| || |||||||||||| || |||||||||||||||||||| |||| ||||||| || ||||||||||| |||||||||||||||||| | |
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|
| T |
5172895 |
gataagaatgtcaaggatgtgagattactaatgaaggatggaaaatttccactgaatagattatggctaaggtcaagaattctgaggtttgttaagttac |
5172796 |
T |
|
| Q |
117 |
ttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaataattaactatgtc |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
5172795 |
ttaaacactcaggaagtttagccccaaacatgtttttgctgatatccagttctaccaaatccttcaaattgcatagtcctgtcataattaactatgtc |
5172698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 5213803 - 5213606
Alignment:
| Q |
1 |
gtaatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||| ||||| || ||| |||||||| | |
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|
| T |
5213803 |
gtaatttccaaagagggataagtatgccagtgatgtgagattactaatgaaggatggaaaatttccactgaacaaattatagctaagttcaagaacattc |
5213704 |
T |
|
| Q |
101 |
aggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgt |
198 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || ||||||||||| |||||| || || ||||||||| ||||||| ||||||||||||| |
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|
| T |
5213703 |
aggtttgttaagttgcttaaacactcgggaagttgcgcgctaaacatgttatagctgatatctagctctaccaaatccttcaatttgcatagtcctgt |
5213606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 4857088 - 4857151
Alignment:
| Q |
1 |
gtaatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttc |
65 |
Q |
| |
|
|||||||||| ||| ||||| |||||| || |||||||||||||||||||||||||||||||||| |
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| T |
4857088 |
gtaatttccatagatggata-gtatgcaagagatgtgagattggtagtgaaggatggaaaatttc |
4857151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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