View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_286 (Length: 230)
Name: NF11280A_low_286
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_286 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 25633835 - 25633927
Alignment:
| Q |
135 |
gcatatttctctgaaaactattctggtatataagctgaaacaccaaagaaatgatatat--acataaaatgacgagtttcttgtgaaaaatgt |
225 |
Q |
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| T |
25633835 |
gcatatttctctgaaaactattctggtatataagctgaaacaccaaagaaatgatatatacacataaaatgacgagtttcttgtgaaaaatgt |
25633927 |
T |
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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25633745 - 25633788
Alignment:
| Q |
1 |
tgaactgtttgtgcctcctcggcctcctatttacttcggtgacg |
44 |
Q |
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| T |
25633745 |
tgaactgtttgtgcctcctcggcctcctatttacctcggtgacg |
25633788 |
T |
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