View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_29 (Length: 405)
Name: NF11280A_low_29
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 8700013 - 8699769
Alignment:
| Q |
13 |
attctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgatnnnnnnnnnngttttaaataagta |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8700013 |
attctagaactattatggattaagtttgtaagcggttcaagcagctcttgaaattttattgcagtttttacttgataaaaaaaaaagttttaaataagta |
8699914 |
T |
|
| Q |
113 |
ttttctattctatcctagaatacttaatgagatggtgaggaatctcctacaagtcttgatttcaaatctagaagagttttgtgattcattgtgatgcctt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8699913 |
ttttctattctatcctagaatacttaatgagatggtgaggaatctcctagaggtcttgatttcaaatctagaagagttttgtaattcattgtgatgcctt |
8699814 |
T |
|
| Q |
213 |
acccgacttaaggaattagtctatacactttgcacaaagataccc |
257 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
8699813 |
acccgatttaaggaattagtttatacactttgcacagagataccc |
8699769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 14382892 - 14382932
Alignment:
| Q |
108 |
aagtattttctattctatcctagaatacttaatgagatggt |
148 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
14382892 |
aagtattttctattctatcctaaaatacttaaagagatggt |
14382932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 52773602 - 52773527
Alignment:
| Q |
13 |
attctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgat |
88 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52773602 |
attctagaactattacggactaactttgtaagcggttgaggcagctcctgaaattttattgcagtttttacttgat |
52773527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University