View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_291 (Length: 230)
Name: NF11280A_low_291
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_291 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 25177398 - 25177622
Alignment:
| Q |
7 |
tctccacctcaaatatgaacacaaaaagtcattttttaagagtttactttaaactataaataaatcttaactaattttatcttatcttatttaattaatc |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25177398 |
tctccatctcaaatatgaacacaaaaagtcattttttaagagtttaatttaaactataaataaatcttaactaattttatcttatcttatttaattaatc |
25177497 |
T |
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| Q |
107 |
atttgattactagaata-ccctatgttaatttggtattttgtttttaatagttttgtcttagtcatattggaatatagtgctatatatataccaaacgtt |
205 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25177498 |
atttgattactagaatacccctatgttaatttggtattttgtttttaatagttttgtcttagtcatactggaatatagtgctatatatataccaaacgtt |
25177597 |
T |
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| Q |
206 |
ttacatgcacttatagagtgtaggg |
230 |
Q |
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||||||||||||||||||||||||| |
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| T |
25177598 |
ttacatgcacttatagagtgtaggg |
25177622 |
T |
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