View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_292 (Length: 230)
Name: NF11280A_low_292
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_292 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 24216105 - 24215890
Alignment:
| Q |
7 |
cccccatcatcggcctccacatcgaacagagtcaatcaaactcagccgccactctccaactctgcatcaacaacttctgcctcgttttccagatcatcca |
106 |
Q |
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| T |
24216105 |
cccccatcatcggcctccacatcaaacggagtcaatcaaactcagccgccactctccaactctgcatcaacaacttctgcctcgttttccagatcatcca |
24216006 |
T |
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| Q |
107 |
ctccccctacgtttgtgcctcgctctctaactaccttgcaagccctcacaacagattcattggtatcggaatcaaagcagacgttgtaaagcttctagaa |
206 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24216005 |
ctccccctacgtttgtgcttcgctctctaactacctcgcaagccctcacaacagattcattggtatcggaatcaaagcagacgttgtaaagcttctagaa |
24215906 |
T |
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| Q |
207 |
gatcatggtctccact |
222 |
Q |
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|||||||||||||||| |
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| T |
24215905 |
gatcatggtctccact |
24215890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 24210346 - 24210186
Alignment:
| Q |
9 |
cccatcatcggcctccacatcgaacagagtcaatcaaactcagccgccactctccaactctgcatcaacaacttctgcctcgttttccagatcatccact |
108 |
Q |
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|||||||||||||||||||| |||| ||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||| ||| ||| |||||| |
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| T |
24210346 |
cccatcatcggcctccacattgaacggagtccatcaaactcagcagccactctcaccctctgcattaacaacttctgcctcgtttaccaaatcttccact |
24210247 |
T |
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| Q |
109 |
ccccctacgtttgtgcctcgctctctaactaccttgcaagccctcacaacagattcattgg |
169 |
Q |
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| T |
24210246 |
ccccctatcttaacgcctccctctccaactacctttctaaccctaacaacagattcgttgg |
24210186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 24217433 - 24217362
Alignment:
| Q |
98 |
gatcatccactccccctacgtttgtgcctcgctctctaactaccttgcaagccctcacaacagattcattggta |
171 |
Q |
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| T |
24217433 |
gatcatccaccccccctacgtttttgcctc--tctctaattaccttgcaagccctcacaacagattcattggta |
24217362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 24224864 - 24224810
Alignment:
| Q |
60 |
ctccaactctgcatcaacaacttctgcctcgttttccagatcatccactccccct |
114 |
Q |
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||||| ||||| ||||||||| ||||||||||||||| ||||| |||||||||| |
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| T |
24224864 |
ctccagctctgtatcaacaaccgctgcctcgttttccaaatcatgcactccccct |
24224810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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