View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_295 (Length: 229)
Name: NF11280A_low_295
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_295 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 11688551 - 11688711
Alignment:
| Q |
24 |
aacagagatttaagaaaataaaatgttaatgaaggtataatgtcgttgtgttgaggagcatgaagacacggagagagaaagaatgtacatgtcctcaata |
123 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11688551 |
aacaaagatttaagaaaataaaatgttaatgaaggtataatgtcgttgtgttgaggagcatgaagacacggagagagaaagaatgtacatgtcctca--a |
11688648 |
T |
|
| Q |
124 |
tgccagtgcaacacttttacactgccaacccaactatttgaagtaagtatcgtgagctccaag |
186 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
11688649 |
tgccagtgcaacacttttacattgccaacccaactatttgaactcagtatcgtgagctccaag |
11688711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 11691803 - 11691927
Alignment:
| Q |
62 |
aatgtcgttgtgttgaggagcatgaagacacggagagagaaagaatgtacatgtcctcaatat--gccagtgcaacacttttacactgccaacccaacta |
159 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
11691803 |
aatgttgttgtgttgaggaacatgaagacacggagagagaaagaatgta--tgtcctcaatatatgccagtgcaacacttttacactgccaacccaaata |
11691900 |
T |
|
| Q |
160 |
tttgaagtaagtatcgtgagctccaag |
186 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
11691901 |
tttgaactaagtatcgtgagctccaag |
11691927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University