View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_298 (Length: 229)
Name: NF11280A_low_298
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_298 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29583961 - 29584183
Alignment:
| Q |
1 |
tatgatgccttacagccacacaaggagcacaagtatagtgagttccacttgctctaagttcaagtgatgttgcagctccaattctttgaactaaatctgc |
100 |
Q |
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| T |
29583961 |
tatgatgccttacagccacacaaggagcacaagtatagtgagttctacttgctctaagttcaagtgatattgcagctccaattctttgaactaaatctgc |
29584060 |
T |
|
| Q |
101 |
atctctacatgcacaccacaaatgtagaatcaaagctttttcaagataacaaaattatttgttaacataaagtacaaaccaaatttacttgtcaaacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29584061 |
atctctacatgcacaccacaaatgtagaatcaaagctttttcaagataacaaaattatttgttaacataaagtacaaaccaaatttacttgtcaaacatg |
29584160 |
T |
|
| Q |
201 |
gaaggatttgacacgatatttag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
29584161 |
gaaggatttgacacgatatttag |
29584183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 29610729 - 29610626
Alignment:
| Q |
6 |
tgccttacagccacacaaggagcacaagtatagtgagttccacttgctctaagttcaagtgatgttgcagctccaattctttgaactaaatctgcatctc |
105 |
Q |
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|||||||||| |||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| |
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| T |
29610729 |
tgccttacagatacactaggggctaaagtatagtgagttccacttgctctaagttcaagtgacgttgcagctgcaattttttgaactaaatctgcatctc |
29610630 |
T |
|
| Q |
106 |
taca |
109 |
Q |
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|||| |
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| T |
29610629 |
taca |
29610626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 25128780 - 25128882
Alignment:
| Q |
5 |
atgccttacagccacacaaggagcacaagtatagtgagttccacttgctctaagttcaagtgatgttgcagctccaattctttgaactaaatctgcatct |
104 |
Q |
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||||||||| || |||||||||||| | |||||||| |||| |||||| ||| |||||| | |||||||||||||||||| ||||||||| |||||| |
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| T |
25128780 |
atgccttaccgcgacacaaggagcaaagttatagtgaattccgcttgctttaacttcaagcgccgttgcagctccaattcttctaactaaatcagcatct |
25128879 |
T |
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| Q |
105 |
cta |
107 |
Q |
| |
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||| |
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| T |
25128880 |
cta |
25128882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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