View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_299 (Length: 229)

Name: NF11280A_low_299
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_299
NF11280A_low_299
[»] chr7 (9 HSPs)
chr7 (16-228)||(23983290-23983502)
chr7 (142-229)||(36449287-36449373)
chr7 (94-197)||(9107308-9107410)
chr7 (170-229)||(22567912-22567970)
chr7 (13-56)||(36449164-36449207)
chr7 (24-110)||(8745244-8745330)
chr7 (21-229)||(3478440-3478647)
chr7 (124-229)||(9427902-9428007)
chr7 (184-229)||(28534311-28534355)
[»] chr2 (16 HSPs)
chr2 (16-189)||(16952207-16952380)
chr2 (16-189)||(17022872-17023045)
chr2 (16-189)||(17060178-17060351)
chr2 (21-223)||(10173368-10173570)
chr2 (85-206)||(20572226-20572346)
chr2 (24-110)||(34230292-34230378)
chr2 (149-229)||(12343037-12343116)
chr2 (153-229)||(27879935-27880011)
chr2 (179-228)||(4974992-4975042)
chr2 (179-228)||(4992900-4992950)
chr2 (170-229)||(13699086-13699144)
chr2 (125-228)||(27740153-27740255)
chr2 (24-110)||(7696053-7696139)
chr2 (171-229)||(22884934-22884991)
chr2 (26-96)||(41086715-41086785)
chr2 (154-229)||(41086572-41086648)
[»] chr1 (13 HSPs)
chr1 (16-225)||(16577344-16577554)
chr1 (27-229)||(41126272-41126462)
chr1 (153-229)||(38548859-38548934)
chr1 (143-229)||(16148987-16149073)
chr1 (24-110)||(16147649-16147735)
chr1 (153-229)||(38544538-38544613)
chr1 (149-229)||(32882584-32882665)
chr1 (24-110)||(6583120-6583206)
chr1 (24-110)||(31290923-31291009)
chr1 (142-221)||(10785252-10785330)
chr1 (170-227)||(17033810-17033866)
chr1 (149-177)||(24659146-24659174)
chr1 (125-201)||(49820311-49820387)
[»] chr5 (8 HSPs)
chr5 (7-222)||(17853861-17854073)
chr5 (77-229)||(26045746-26045901)
chr5 (142-226)||(33258665-33258750)
chr5 (170-229)||(39183986-39184044)
chr5 (142-229)||(14302226-14302314)
chr5 (153-201)||(24072094-24072142)
chr5 (7-55)||(24072226-24072274)
chr5 (150-198)||(39024259-39024306)
[»] chr6 (5 HSPs)
chr6 (16-228)||(32935126-32935337)
chr6 (24-107)||(20701710-20701793)
chr6 (149-229)||(20701583-20701664)
chr6 (90-198)||(21266263-21266369)
chr6 (125-201)||(33968443-33968518)
[»] chr4 (10 HSPs)
chr4 (94-198)||(12296322-12296426)
chr4 (21-224)||(19673188-19673392)
chr4 (21-224)||(19815009-19815213)
chr4 (142-229)||(22810943-22811029)
chr4 (142-229)||(48098546-48098632)
chr4 (142-229)||(49747739-49747826)
chr4 (149-229)||(38637016-38637095)
chr4 (24-110)||(49528163-49528249)
chr4 (153-198)||(46487477-46487522)
chr4 (157-229)||(20632268-20632339)
[»] chr3 (9 HSPs)
chr3 (24-167)||(39021122-39021267)
chr3 (142-201)||(14879648-14879708)
chr3 (150-201)||(823246-823297)
chr3 (24-110)||(25647777-25647863)
chr3 (149-229)||(14194152-14194229)
chr3 (129-174)||(23328188-23328233)
chr3 (151-226)||(28937498-28937574)
chr3 (185-229)||(32010016-32010060)
chr3 (150-229)||(33143733-33143813)
[»] scaffold1613 (1 HSPs)
scaffold1613 (153-229)||(817-892)
[»] chr8 (5 HSPs)
chr8 (149-229)||(10248349-10248430)
chr8 (108-189)||(17720545-17720626)
chr8 (24-110)||(17656906-17656992)
chr8 (142-229)||(12197857-12197945)
chr8 (142-229)||(12442285-12442373)
[»] scaffold0063 (1 HSPs)
scaffold0063 (24-229)||(58218-58427)
[»] scaffold0050 (1 HSPs)
scaffold0050 (142-229)||(36920-37005)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 23983290 - 23983502
Alignment:
Q  16 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 115  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||| ||||||||| ||||||| ||||| |||||||    
T  23983290 tttttgtgttctttcggtgtatcggaggttgagaggtggtgacagttgaatgatctttcgaatatgagcttttcggatctggttcagctttgatgatgag 23983389  T
Q  116 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtct 215  Q
    || ||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |||| ||||||| |||||    
T  23983390 gaccgagaatttcatttagagcggtcttcttttggggtgagtagtgatgatgggtagttatgtatatcgtttttcagtggttgttttcgtgaatgagtct 23983489  T
Q  216 gttttaggtggtg 228  Q
    |||||||||||||    
T  23983490 gttttaggtggtg 23983502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 36449287 - 36449373
Alignment:
Q  142 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||| | ||||||||||||||||| ||||||||| |||||||||||||| ||| |||| ||||||  ||||| |||||||||||||    
T  36449287 ttcttttgtggtgagtagtgacgatgagtggttatggatatcgtttttcagcggttgttt-cgtgaagtagtctattttaggtggtga 36449373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 9107308 - 9107410
Alignment:
Q  94 gtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagt 193  Q
    |||| |||||||||||||||||||| | |  |||||||||||| ||  || ||| ||| ||||||||| ||||||||||||||| |||||||||| || |    
T  9107308 gtggctcaactttggtgatgaggatgg-gtgtttcatttagaggggagttattttgggatgagtagtggcgatgggtggttatggatatcgttttccaat 9107406  T
Q  194 ggtc 197  Q
    ||||    
T  9107407 ggtc 9107410  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 22567970 - 22567912
Alignment:
Q  170 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||||| ||| |||||||||||||| |||| ||||||  |||||||||||||||||||    
T  22567970 tggttatggataccgtttttcagtggttgttt-cgtgaaagagtctgttttaggtggtga 22567912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 36449164 - 36449207
Alignment:
Q  13 ttatttttgtgttctttcggtgtatcggaggttgagaggtggtg 56  Q
    ||||||| || ||||||||||| |||||||||||||||||||||    
T  36449164 ttattttggttttctttcggtggatcggaggttgagaggtggtg 36449207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 8745244 - 8745330
Alignment:
Q  24 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 110  Q
    ||||||||||| ||||||||| ||||||| |||  ||| | ||||| ||||  ||| ||| ||||||||||||| ||| ||||||||    
T  8745244 ttctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcagctttggtg 8745330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 3478440 - 3478647
Alignment:
Q  21 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 120  Q
    |||||||||||||| ||||||| | ||||||||| |  ||| ||||||| ||||| || |||  ||||| ||  ||| | | |||||||| ||||||  |    
T  3478440 gtgttctttcggtggatcggagatcgagaggtggcggaagctgaatgatctttcggatgtgaacttttctgagttggctaagctttggtgttgaggactg 3478539  T
Q  121 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgttt 219  Q
     || ||| |||| |||  || |||||| ||||||||||||||||| || |||| ||| |||||| |||| |||| ||||| | |||||| | ||||||||    
T  3478540 ggagtttaattttgaggagtgttcttt-ggggtgagtagtgacgacggttggtgatggatatcgcttttacagt-gtcgtattcgtgaagacgtctgttt 3478637  T
Q  220 taggtggtga 229  Q
     || ||||||    
T  3478638 gagttggtga 3478647  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 9428007 - 9427902
Alignment:
Q  124 atttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttagg 223  Q
    ||||||||||||| | |  | ||| ||| ||||||||||||| ||||||||||| ||||| ||||| |||||| || | ||||||  | | |||||||||    
T  9428007 atttcatttagagggatgctatttagggatgagtagtgacgacgggtggttatggatatcattttttagtggttgtcttcgtgaaagaatttgttttagg 9427908  T
Q  224 tggtga 229  Q
    | ||||    
T  9427907 tagtga 9427902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 28534355 - 28534311
Alignment:
Q  184 gtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||||||||||||||| ||||||  |||||||||||||||||||    
T  28534355 gtttttcagtggtcgttt-cgtgaaagagtctgttttaggtggtga 28534311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 16952380 - 16952207
Alignment:
Q  16 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 115  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  16952380 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 16952281  T
Q  116 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 189  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| |||||    
T  16952280 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatctttttt 16952207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 17023045 - 17022872
Alignment:
Q  16 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 115  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  17023045 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 17022946  T
Q  116 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 189  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| |||||    
T  17022945 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatctttttt 17022872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 17060351 - 17060178
Alignment:
Q  16 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 115  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  17060351 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 17060252  T
Q  116 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 189  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| |||||    
T  17060251 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatctttttt 17060178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 10173570 - 10173368
Alignment:
Q  21 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 120  Q
    |||||||||||||| ||||||||| |||||||||||  ||  ||||||| ||| ||||||||| ||||||||||||| ||| |||||||| ||||||  |    
T  10173570 gtgttctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagcttttcggatgtggctcagctttggtgttgaggactg 10173471  T
Q  121 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttt 219  Q
    ||| ||| |||| |||  || |||||| ||||||||||||||||||| |||||  |||||||||||||| |||| ||||||| | |||| | ||||||||    
T  10173470 agagtttaattttgaggagtattcttt-ggggtgagtagtgacgatgagtggtgttgtatatcgtttttacagtagtcgttttcatgaagacgtctgttt 10173372  T
Q  220 tagg 223  Q
    ||||    
T  10173371 tagg 10173368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 20572226 - 20572346
Alignment:
Q  85 ttttcggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg 184  Q
    ||||||||| ||||| | |||| ||||||||||  |||| |||||||||||| ||| |||||| | ||||||||||| |||| |||||||||| ||||||    
T  20572226 ttttcggatatggtttagctttagtgatgaggaatgagagtttcatttagaggggtgttcttttgaggtgagtagtggcgat-ggtggttatggatatcg 20572324  T
Q  185 tttttcagtggtcgtttacgtg 206  Q
    ||||||||||||||||| ||||    
T  20572325 tttttcagtggtcgttttcgtg 20572346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 34230292 - 34230378
Alignment:
Q  24 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 110  Q
    ||||||||||| |||||||||||||||||||||  ||| ||||||| |||| |||| ||| ||||| ||||||| ||||||||||||    
T  34230292 ttctttcggtggatcggaggttgagaggtggtggaagctgaatgatctttcaaataagagcttttcagatgtggctcaactttggtg 34230378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 12343037 - 12343116
Alignment:
Q  149 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    ||||||||||||||||||| ||||||  | ||||||||||| ||| |||||||| ||||||  |||||||||||||||||||    
T  12343037 ggggtgagtagtgacgatgagtggtt--ggatatcgtttttacagaggtcgttttcgtgaaggagtctgttttaggtggtga 12343116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 27880011 - 27879935
Alignment:
Q  153 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||||||  |||| ||||||||| || ||||||||||| |||||||| | ||||  |||||||||||||||||||    
T  27880011 tgagtagtggtgatgagtggttatggatttcgtttttcagaggtcgttttcctgaaggagtctgttttaggtggtga 27879935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 4974992 - 4975042
Alignment:
Q  179 atatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtg 228  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  4974992 atatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtg 4975042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 4992900 - 4992950
Alignment:
Q  179 atatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtg 228  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  4992900 atatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtg 4992950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 13699144 - 13699086
Alignment:
Q  170 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||||||||| ||||||||||||||||||| ||| ||  ||| |||||||||||||||    
T  13699144 tggttatgtataccgtttttcagtggtcgttt-cgtaaaagagtgtgttttaggtggtga 13699086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 27740153 - 27740255
Alignment:
Q  125 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggt 224  Q
    |||||||||||| ||| || ||  ||| ||||||||| ||| | ||||||||| |||||||| ||||||||| |||| ||||||  ||| ||| ||||||    
T  27740153 tttcatttagaggggtgttattctgggatgagtagtggcgacgagtggttatgaatatcgttcttcagtggtagttt-cgtgaaggagtttgtattaggt 27740251  T
Q  225 ggtg 228  Q
    ||||    
T  27740252 ggtg 27740255  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 7696053 - 7696139
Alignment:
Q  24 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 110  Q
    ||||||||||| |||| |||| | |||||||||  ||| ||||||| ||||| ||| ||| |||  |||||||| ||||||||||||    
T  7696053 ttctttcggtggatcgaaggtcgggaggtggtggaagctgaatgatctttcggataggagatttgaggatgtggctcaactttggtg 7696139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 22884991 - 22884934
Alignment:
Q  171 ggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    ||||||| || |||||| ||||||||||||| ||||||  |||||||||||||||||||    
T  22884991 ggttatggatttcgtttgtcagtggtcgttt-cgtgaaggagtctgttttaggtggtga 22884934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 41086785 - 41086715
Alignment:
Q  26 ctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtg 96  Q
    ||||||||| ||||||||| |||||||||||  ||| ||||||| ||||| ||| ||| |||| |||||||    
T  41086785 ctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcggataagagctttttggatgtg 41086715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 41086648 - 41086572
Alignment:
Q  154 gagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    ||||||||||||||||||||  || |||||||||||  |||||||| || ||| ||   ||||||||||||||||||    
T  41086648 gagtagtgacgatgggtggtattggatatcgtttttagagtggtcgctttcgttaaggggtctgttttaggtggtga 41086572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 16577344 - 16577554
Alignment:
Q  16 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 115  Q
    |||||| |||||||||||  || ||||||||||||||||||  ||| ||||||| ||| ||||| ||| ||||||||||||| |||||||||||||||      
T  16577344 tttttgcgttctttcggtagattggaggttgagaggtggtggaagctgaatgatctttggaataggagcttttcggatgtggctcaactttggtgatggt 16577443  T
Q  116 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatc-gtttttcagtggtcgtttacgtgaataagtc 214  Q
    ||  || | |||| ||||||| ||| |||||| || |||||||| |||||||  |||||||| |||||  ||||| ||||||||||| ||||||  ||||    
T  16577444 gactgaaagtttcttttagaggggtgttcttttggagtgagtagggacgatgaatggttatggatatcattttttgagtggtcgttttcgtgaaagagtc 16577543  T
Q  215 tgttttaggtg 225  Q
    |||||||||||    
T  16577544 tgttttaggtg 16577554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 41126462 - 41126272
Alignment:
Q  27 tttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgagaatt 126  Q
    |||||||| || ||||||||||||||| ||  ||| ||| ||| ||| | ||| ||| ||||| ||||||| |||||||||||||||||||  |||| ||    
T  41126462 tttcggtggattggaggttgagaggtgctggaagctgaacgatcttttggataggagcttttcagatgtggatcaactttggtgatgaggactgagagtt 41126363  T
Q  127 tcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtgg-tcgtttacgtgaataagtctgttttaggtg 225  Q
    ||||||||||             |||||||||||||||||||||||| ||| |||||||||| |||||| | |||| |||||||  ||||||||||||||    
T  41126362 tcatttagag-------------gggtgagtagtgacgatgggtggtgatggatatcgttttacagtggtttgttttcgtgaatgcgtctgttttaggtg 41126276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 38548934 - 38548859
Alignment:
Q  153 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||  |||||||||||||||||||    
T  38548934 tgagtagtgacgatgggtggttatgaatatcgtttttcagtgatcgttt-cgtgaaagagtctgttttaggtggtga 38548859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 16148987 - 16149073
Alignment:
Q  143 tctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    ||||| ||||||||||||||||||||||| || || ||||||||||||||| ||||||||| ||||   ||||||||||||||||||    
T  16148987 tctttgggggtgagtagtgacgatgggtgcttttggatatcgtttttcagtagtcgtttacatgaaggtgtctgttttaggtggtga 16149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 16147649 - 16147735
Alignment:
Q  24 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 110  Q
    ||||||||||  ||||||||| |||||||||||| ||  ||||||| ||||  ||||||| ||||||||||||| ||| ||||||||    
T  16147649 ttctttcggtagatcggaggtggagaggtggtgaaagttgaatgatctttcagatatgagcttttcggatgtggctcagctttggtg 16147735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 38544613 - 38544538
Alignment:
Q  153 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    ||||||||||||||| ||||||||| |||||||||| ||||| ||  || ||||||  |||||||||||||||||||    
T  38544613 tgagtagtgacgatgagtggttatggatatcgttttccagtgatc-attccgtgaaagagtctgttttaggtggtga 38544538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 32882584 - 32882665
Alignment:
Q  149 ggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||||||||||||||||||||||  || ||||||| ||| ||||| |||||| ||||||  |||| |||||||| |||||    
T  32882584 ggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttaggcggtga 32882665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 6583206 - 6583120
Alignment:
Q  24 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 110  Q
    ||||||||||| ||||||||| |||||||||||  ||| || |||| ||||  ||| ||| |||||||||| || ||| ||||||||    
T  6583206 ttctttcggtgaatcggaggtcgagaggtggtggaagctgattgatctttcagataggagcttttcggatgcggctcagctttggtg 6583120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 31291009 - 31290923
Alignment:
Q  24 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 110  Q
    ||||||||||| ||||||||| |||||||||||  ||  |  |||| ||||| ||| ||| ||||||||||||| ||| ||||||||    
T  31291009 ttctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctcagctttggtg 31290923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 10785330 - 10785252
Alignment:
Q  142 ttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgtttta 221  Q
    ||||| |||| |||||||||||||||||||||  || |||||| ||||||||  ||||||| ||||||  |||||||||||    
T  10785330 ttcttgcgggatgagtagtgacgatgggtggt--tggatatcgttttttcagatgtcgttttcgtgaaggagtctgtttta 10785252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 17033810 - 17033866
Alignment:
Q  170 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggt 227  Q
    |||||||||||| ||||||| ||||||||||| ||||||  ||| |||||||||||||    
T  17033810 tggttatgtataccgtttttaagtggtcgttt-cgtgaaagagtatgttttaggtggt 17033866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 24659146 - 24659174
Alignment:
Q  149 ggggtgagtagtgacgatgggtggttatg 177  Q
    |||||||||||||||||||||||||||||    
T  24659146 ggggtgagtagtgacgatgggtggttatg 24659174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 49820311 - 49820387
Alignment:
Q  125 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 201  Q
    |||||||||||| |||  | ||| ||| || || ||| ||| ||||||||||| |||||||||||||||| ||||||    
T  49820311 tttcatttagaggggtgatattttgggatgtgtggtggcgacgggtggttatggatatcgtttttcagtgctcgttt 49820387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 17854073 - 17853861
Alignment:
Q  7 ttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaacttt 106  Q
    ||||| |||||||  ||||||||||||| | | || ||||||||||||||  ||  ||||||| ||| ||||||||  ||||||||||||| ||| || |    
T  17854073 ttgggcttattttaatgttctttcggtggacctgaagttgagaggtggtggaagttgaatgatctttagaatatgac-ttttcggatgtggctcagctat 17853975  T
Q  107 ggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtg 206  Q
    |||||||||||| | |  ||||||||||||  |||| |||| |||||||||||||  |||||||||||||| |||||||||||||||| |||||| |||     
T  17853974 ggtgatgaggattg-gtgtttcatttagaggtgtctacttttggggtgagtagtggtgatgggtggttatggatatcgtttttcagtgatcgttt-cgta 17853877  T
Q  207 aataagtctgttttag 222  Q
    ||  ||||||||||||    
T  17853876 aaggagtctgttttag 17853861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 229
Target Start/End: Complemental strand, 26045901 - 26045746
Alignment:
Q  77 atatgaggttttcggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctt--tcggggtgagtagtgacgatgggtggtt 174  Q
    ||||||| |||||||| |||  |||||||||||| | ||||| |||| ||| |||| ||| ||| || ||  | ||||||||||||||||||||| |||     
T  26045901 atatgagcttttcggaggtgactcaactttggtgtttaggattgagagtttaattttgaggggtgtttttctttggggtgagtagtgacgatgggaggtg 26045802  T
Q  175 atgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
     || || |||||||| | |||||| ||| | |||| ||||||||||||||||||||    
T  26045801 ttggatttcgtttttaccgtggtcattttcatgaagaagtctgttttaggtggtga 26045746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 33258750 - 33258665
Alignment:
Q  142 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtgg 226  Q
    |||||| ||||||||||||| |||||| ||||  || ||||||||||| ||||||||| || |||||| |  ||||||||||||||    
T  33258750 ttctttaggggtgagtagtggcgatggatggtattggatatcgtttttacagtggtcgctttcgtgaagagatctgttttaggtgg 33258665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 39184044 - 39183986
Alignment:
Q  170 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||||| ||| ||||||||||||||||||| |||||   |||||||||||||||||||    
T  39184044 tggttatggataccgtttttcagtggtcgttt-cgtgatagagtctgttttaggtggtga 39183986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 14302314 - 14302226
Alignment:
Q  142 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||| ||| |||||||||||||  ||||||  || ||||||||||| || ||||||||| || |||  | |||||||||||||||||    
T  14302314 ttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtcgttttcgcgaaggaatctgttttaggtggtga 14302226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 24072142 - 24072094
Alignment:
Q  153 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 201  Q
    ||||||||||||||||||| | ||  ||||||||||| |||||||||||    
T  24072142 tgagtagtgacgatgggtgatcatagatatcgttttttagtggtcgttt 24072094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 24072274 - 24072226
Alignment:
Q  7 ttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggt 55  Q
    |||||||| |||| |||||||||||||| | |||||||||| |||||||    
T  24072274 ttggggtttttttggtgttctttcggtggaccggaggttgaaaggtggt 24072226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 39024306 - 39024259
Alignment:
Q  150 gggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcg 198  Q
    |||||||||||||||||| ||| ||||| ||||||||||||| ||||||    
T  39024306 gggtgagtagtgacgatgagtg-ttatggatatcgtttttcaatggtcg 39024259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 32935337 - 32935126
Alignment:
Q  16 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 115  Q
    |||| ||||||||||||||  ||  |||||| |||||||||  ||| | ||||| ||||||| ||||| |||||||||||   ||| |||||||||||||    
T  32935337 ttttagtgttctttcggtggttcaaaggttgggaggtggtggaagctgcatgatctttcgaacatgagtttttcggatgtaactcagctttggtgatgag 32935238  T
Q  116 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtct 215  Q
     |  | || |||||||||||| | | || ||| ||||| |||||||| |||||||||||||||||||||||||| || || ||||| ||| ||  |||||    
T  32935237 cactgtgagtttcatttagagggatgtttttt-ggggtcagtagtgatgatgggtggttatgtatatcgtttttgagggggcgttttcgttaaggagtct 32935139  T
Q  216 gttttaggtggtg 228  Q
     ||||||||||||    
T  32935138 attttaggtggtg 32935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 20701793 - 20701710
Alignment:
Q  24 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttg 107  Q
    ||||||||||| ||||||||| ||||||| |||  ||| ||||||| ||||| ||| ||| |||||| |||||| |||||||||    
T  20701793 ttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctcaactttg 20701710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 20701664 - 20701583
Alignment:
Q  149 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||||||||||||||||||| ||  || ||||||||||| ||||||| | || |||||||  ||||||| ||||||||||    
T  20701664 ggggtgagtagtgacgatgggtagtattggatatcgtttttacagtggttgctttcgtgaatgggtctgttataggtggtga 20701583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 21266263 - 21266369
Alignment:
Q  90 ggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 189  Q
    |||||||| |||  ||||||| ||||||| |||  |||| |||| | |||| ||| || |||||||||||||||||| ||| ||| || || ||||||||    
T  21266263 ggatgtggctcagttttggtgttgaggattgagt-tttcttttacaacggtgttcctttggggtgagtagtgacgat-ggttgttctggatgtcgttttt 21266360  T
Q  190 cagtggtcg 198  Q
    |||||||||    
T  21266361 cagtggtcg 21266369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 33968518 - 33968443
Alignment:
Q  125 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 201  Q
    |||||||||||| ||| || ||| ||| |||||||||| ||||  |||||||| ||| | |||||||||||||||||    
T  33968518 tttcatttagaggggtgttattttgggatgagtagtgatgatgc-tggttatggataccatttttcagtggtcgttt 33968443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 12296322 - 12296426
Alignment:
Q  94 gtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagt 193  Q
    |||| ||||||| |||||||||||  |||  |||||||||||| ||| || ||| ||| ||||||||| ||||||||||||||| |||||||||||||||    
T  12296322 gtggctcaacttaggtgatgaggacggagtgtttcatttagaggggtgttattttgggatgagtagtggcgatgggtggttatggatatcgtttttcagt 12296421  T
Q  194 ggtcg 198  Q
    |||||    
T  12296422 ggtcg 12296426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 19673188 - 19673392
Alignment:
Q  21 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 120  Q
    |||||||||||||| ||||  ||| || || |||||  |||  |||||||||| | ||||||  ||||||||||||| | |||||||||| ||||||  |    
T  19673188 gtgttctttcggtggatcgacggtcgatagatggtggaagctaaatgatattttggatatgaacttttcggatgtggctaaactttggtgttgaggactg 19673287  T
Q  121 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgttt 219  Q
    ||| ||| |||| |||  || |||||| ||||||||||||||||| || ||||  || |||| | |||| |||||||| ||| |||||| | ||||||||    
T  19673288 agagtttaattttgaggagtgttctttgggggtgagtagtgacgacggatggtgttggatattgcttttacagtggtcattttcgtgaagacgtctgttt 19673387  T
Q  220 taggt 224  Q
     ||||    
T  19673388 gaggt 19673392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 19815213 - 19815009
Alignment:
Q  21 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 120  Q
    |||||||||||||| | ||||||| ||||| |||||  |||  |||||| ||||| ||| ||  ||||| ||||||| | |||||||||| ||||||  |    
T  19815213 gtgttctttcggtggaccggaggtcgagagatggtggaagctaaatgatctttcggataggaacttttccgatgtggctaaactttggtgttgaggactg 19815114  T
Q  121 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttt 219  Q
    ||| ||| || | |||  || |||||| ||||||||||||||| | || ||||  || ||||| ||||| | |||||| ||| |||||| | ||||||||    
T  19815113 agagtttaatcttgagaagtgttctttgggggtgagtagtgacaacggatggtattggatatcatttttaccgtggtcattttcgtgaagacgtctgttt 19815014  T
Q  220 taggt 224  Q
     ||||    
T  19815013 gaggt 19815009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 22811029 - 22810943
Alignment:
Q  142 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||| |||||||||||||||||||| ||||   | ||||||||||| ||||||||| || ||||||  ||||||||||||| |||||    
T  22811029 ttctttgggggtgagtagtgacgatggatggt--aggatatcgtttttacagtggtcggtttcgtgaagcagtctgttttaggaggtga 22810943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 48098546 - 48098632
Alignment:
Q  142 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||| ||||||||||||||||| |||| || ||| ||||||||||| ||||||||||||  ||||  |||  |||||||||||||||    
T  48098546 ttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttacagtggtcgtttttgtga--aagagtgttttaggtggtga 48098632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 49747739 - 49747826
Alignment:
Q  142 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||| ||||||||||||||| ||||| |||  || || |||||||| || ||||||||| ||||||  |||||||||||||||||||    
T  49747739 ttctttaggggtgagtagtgacaatgggcggtgttggat-tcgtttttacaatggtcgttttcgtgaaagagtctgttttaggtggtga 49747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 38637095 - 38637016
Alignment:
Q  149 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||||||||||||||||||||||  || ||||| ||||| ||| ||| |||| ||||||  ||| |||||||||||||||    
T  38637095 ggggtgagtagtgacgatgggtggt--tggatatcatttttacagcggttgttttcgtgaaggagtttgttttaggtggtga 38637016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 49528163 - 49528249
Alignment:
Q  24 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 110  Q
    ||||||||||| ||||||||| | |||||||||  ||  ||||||| ||||| |||  || ||| ||||||||||||| ||||||||    
T  49528163 ttctttcggtggatcggaggtcgggaggtggtggaagatgaatgatctttcggatagaagctttgcggatgtggttcagctttggtg 49528249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 46487477 - 46487522
Alignment:
Q  153 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcg 198  Q
    ||||||||| ||||  ||||||||| ||||||||||||||||||||    
T  46487477 tgagtagtggcgatatgtggttatgaatatcgtttttcagtggtcg 46487522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 20632339 - 20632268
Alignment:
Q  157 tagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    ||||| ||| |||||||||||| ||||||| ||||||||| ||||  |||||  ||||||||||||| |||||    
T  20632339 tagtggcgacgggtggttatgtgtatcgttcttcagtggttgttt-tgtgaaagagtctgttttagggggtga 20632268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 39021267 - 39021122
Alignment:
Q  24 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatattt-cgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgag 122  Q
    |||||| |||| ||||||||| ||||| ||||| |||| || |||| ||| || ||||||| ||||||||||||| | | |||||||| ||||||  |||    
T  39021267 ttcttttggtggatcggaggtcgagagatggtggtagctgattgatcttttcggatatgagtttttcggatgtggcttagctttggtgttgaggactgag 39021168  T
Q  123 aatttcatttaga-gcggtcttctttcggggtgagtagtgacgatg 167  Q
    | |||||||| || |||   |||||| || ||||||||||||||||    
T  39021167 agtttcattttgacgcgtgtttctttgggtgtgagtagtgacgatg 39021122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 14879648 - 14879708
Alignment:
Q  142 ttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgttt 201  Q
    |||||||||||||| ||||||||||| |||||  || |||||| |||||||||||||||||    
T  14879648 ttctttcggggtgaatagtgacgatgtgtggtgttggatatcgttttttcagtggtcgttt 14879708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 823297 - 823246
Alignment:
Q  150 gggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 201  Q
    |||||||||| | ||| ||||||||||| |||||||||||||||||| ||||    
T  823297 gggtgagtagaggcgaagggtggttatggatatcgtttttcagtggttgttt 823246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 25647777 - 25647863
Alignment:
Q  24 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 110  Q
    |||||| |||| ||||||||| |||||||||||| ||  ||||||| |||||  |||||| |||||||| |||| |||  |||||||    
T  25647777 ttcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttcggttatgagcttttcggacgtggctcagttttggtg 25647863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 14194152 - 14194229
Alignment:
Q  149 ggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||||||||||||||||| ||||  || |||||||| |||||||| || || |||||   |||||||||||||||||||    
T  14194152 ggggtgagtagtgacgatggatggt--tggatatcgttattcagtgg-cgatttcgtgatggagtctgttttaggtggtga 14194229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 23328233 - 23328188
Alignment:
Q  129 atttagagcggtcttctttcggggtgagtagtgacgatgggtggtt 174  Q
    |||| ||| ||| |||||| ||||||||||||||||||||||||||    
T  23328233 attttgagtggtgttctttgggggtgagtagtgacgatgggtggtt 23328188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 28937574 - 28937498
Alignment:
Q  151 ggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtgg 226  Q
    ||||||||||| |||||||||||  || ||||||||||| ||||||||  || ||||||   |||||||||||||||    
T  28937574 ggtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcactttcgtgaaggggtctgttttaggtgg 28937498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 32010016 - 32010060
Alignment:
Q  185 tttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||||| |||||||| ||||||  |||||||||||||||||||    
T  32010016 tttttcagaggtcgttttcgtgaaggagtctgttttaggtggtga 32010060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 33143813 - 33143733
Alignment:
Q  150 gggtgagtagtgacgatgggtggttatgtatatcgttt-ttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||||||||||||| || |||   || ||||||||| ||||||||| |||| ||||||  ||| |||||||||||||||    
T  33143813 gggtgagtagtgacgacggatggggttggatatcgtttgttcagtggtggttttcgtgaaggagtttgttttaggtggtga 33143733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 892 - 817
Alignment:
Q  153 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    ||||||||||||||| ||||||||| |||||||||| ||||| ||  || ||||||  |||||||||||||||||||    
T  892 tgagtagtgacgatgagtggttatggatatcgttttccagtgatc-attccgtgaaagagtctgttttaggtggtga 817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 10248430 - 10248349
Alignment:
Q  149 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    ||||||||||||||||||||||| |   | || |||||||| |||||||||||| ||||||  ||| |||||||||||||||    
T  10248430 ggggtgagtagtgacgatgggtgttgtgggatgtcgtttttacagtggtcgttttcgtgaaggagtttgttttaggtggtga 10248349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 17720626 - 17720545
Alignment:
Q  108 gtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 189  Q
    ||||||||||  |||  |||||||||||| ||| |  ||| ||||||||||||||||||  ||||||||||||||| |||||    
T  17720626 gtgatgaggacggagtgtttcatttagaggggtttatttttggggtgagtagtgacgatatgtggttatgtatatctttttt 17720545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 17656992 - 17656906
Alignment:
Q  24 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 110  Q
    ||||||||||| ||||||||| || ||||||||  ||| ||||||| ||||  ||| ||| ||||| || |||| ||||||||||||    
T  17656992 ttctttcggtggatcggaggtcgataggtggtggaagctgaatgatctttcatataggagcttttcagaggtggctcaactttggtg 17656906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 12197945 - 12197857
Alignment:
Q  142 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||| ||||||||||||||||| |||||||  || ||||||| |||| ||||||||| | | ||||   ||||||| ||||||||||    
T  12197945 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtga 12197857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 12442373 - 12442285
Alignment:
Q  142 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||| ||||||||||||||||| |||||||  || ||||||| |||| ||||||||| | | ||||   ||||||| ||||||||||    
T  12442373 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtga 12442285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 58218 - 58427
Alignment:
Q  24 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgaga 123  Q
    ||||||||||| ||||||||| ||||| || ||  ||| |||| || ||||| ||| ||| |||||| |||||| ||| |||||||| |  |||  ||||    
T  58218 ttctttcggtggatcggaggtcgagagatgatggaagctgaattatctttcggataagagcttttcgaatgtggctcagctttggtgttcgggactgaga 58317  T
Q  124 atttcatttagagcggtctt---ctttcggggtgagtagtgacgatgggtggttatgtatatc-gtttttcagtggtcgtttacgtgaataagtctgttt 219  Q
     ||| |||| |||  || ||   |||| || |||||||||||||| |||| ||  || ||||| ||||| || ||||||||| ||||||  |||||||||    
T  58318 gtttaattttgaggagtgttgttctttgggtgtgagtagtgacgacgggtagtgttggatatcagttttacaatggtcgttttcgtgaaggagtctgttt 58417  T
Q  220 taggtggtga 229  Q
    | ||||||||    
T  58418 ttggtggtga 58427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 36920 - 37005
Alignment:
Q  142 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 229  Q
    |||||| |||||||||||||||| ||| ||||  || || |||||||| ||||||| |||| ||||||  |||||||||||||||||||    
T  36920 ttctttgggggtgagtagtgacggtggatggt--tggatgtcgtttttacagtggtggttt-cgtgaaggagtctgttttaggtggtga 37005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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