View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_30 (Length: 400)
Name: NF11280A_low_30
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_30 |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 80 - 400
Target Start/End: Original strand, 31251816 - 31252136
Alignment:
| Q |
80 |
taacattaaacctgttattttacatactaagtcatnnnnnnnnnnnnnncaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactcta |
179 |
Q |
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| T |
31251816 |
taacattaaacctgttattttacatactaagtcataaaaaggaaaaaaacaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaattcta |
31251915 |
T |
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| Q |
180 |
gatgtcattcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatc |
279 |
Q |
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| T |
31251916 |
gatgtcattcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatc |
31252015 |
T |
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| Q |
280 |
atctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatc |
379 |
Q |
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| T |
31252016 |
atctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaataaatcatagaatcaaaaggaatttgtgatgagaattatc |
31252115 |
T |
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| Q |
380 |
agggccaacattaatttgtga |
400 |
Q |
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| T |
31252116 |
agggccaacattaatttgtga |
31252136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 129 - 398
Target Start/End: Complemental strand, 25815278 - 25815010
Alignment:
| Q |
129 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttattaggggtagcattccaa |
228 |
Q |
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| T |
25815278 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttattaggggtagcattccaa |
25815179 |
T |
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| Q |
229 |
aactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaa |
328 |
Q |
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| T |
25815178 |
aactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggggtcattttatacatggtaatgaaatgagataagaatcaa |
25815079 |
T |
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| Q |
329 |
ttagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatcagggccaacattaatttgt |
398 |
Q |
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| T |
25815078 |
-tagatgttaattaatcataaaatcaaaaggaatttgtgatgagaattattagggccaacattaatttgt |
25815010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 400
Target Start/End: Complemental strand, 23052912 - 23052786
Alignment:
| Q |
274 |
tttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgaga |
373 |
Q |
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| T |
23052912 |
tttatcatctaatgaggtgattttatacatggtgatggaatgagatgagaatcaattagatgttaattaatcataaaatcaaaataaatttgttatgaga |
23052813 |
T |
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| Q |
374 |
attatcagggccaacattaatttgtga |
400 |
Q |
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| T |
23052812 |
tttatcagaaccaacattaatatgtga |
23052786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 23052961 - 23052912
Alignment:
| Q |
193 |
cacaaaagtggtgatttattaggggtagcattccaaaactgcataaaactt |
243 |
Q |
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| T |
23052961 |
cacacaagtggtgatttattagggg-accattccaaaactgcataaaactt |
23052912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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