View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_308 (Length: 229)
Name: NF11280A_low_308
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_308 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 9571345 - 9571573
Alignment:
| Q |
1 |
tcagcagaatgtgtcctcaataacaatttgggtatagaacatgatatggaattggatacaatttagatcacattttgtttcacaataatataacaaattt |
100 |
Q |
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| T |
9571345 |
tcagcagaatgtgtcctcaataacaatttgtgtatagaacatgatatggaattggatccaatttagatcacattttgtttcacaataatatcacaaattt |
9571444 |
T |
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| Q |
101 |
acttataaagaggtatatataaacttaaagatgtttaaagaaaaattaatgcagataattttgaaaatatttgaaacgcagaagctaattttaacgtaca |
200 |
Q |
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| T |
9571445 |
acttataaagaggtatatataaacttaaagatgtttaaagaaaaattaatgcagataattttgaaaatatttgaaacgcagaagctaattttaacgtaca |
9571544 |
T |
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| Q |
201 |
caagctgtttctaaaaagtttgactcttg |
229 |
Q |
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| T |
9571545 |
caagctgtttctaaaaagtttgactcttg |
9571573 |
T |
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