View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_313 (Length: 228)
Name: NF11280A_low_313
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_313 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 20816614 - 20816837
Alignment:
| Q |
1 |
gtgctggaaaaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgaaatc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20816614 |
gtgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatc |
20816713 |
T |
|
| Q |
101 |
taatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcccgcaccagaaaccttaatgcgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20816714 |
taatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtacattttgactttatggaccctcctgcaccagaaaccttaatgcgc |
20816813 |
T |
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| Q |
201 |
gctttggaagtgttgaattacttg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
20816814 |
gctttggaagtgttgaattacttg |
20816837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38779531 - 38779308
Alignment:
| Q |
1 |
gtgctggaaaaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgaaatc |
100 |
Q |
| |
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||||||||| ||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38779531 |
gtgctggaagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatc |
38779432 |
T |
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| Q |
101 |
taatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcccgcaccagaaaccttaatgcgc |
200 |
Q |
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| T |
38779431 |
taatcttgccaacacagttcttacattgaagaaactgggtatagatgatttagttcattttgacttcatggaccctcctgcccctgaaaccttgatgcgt |
38779332 |
T |
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| Q |
201 |
gctttggaagtgttgaattacttg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
38779331 |
gctttggaagtgttgaattacttg |
38779308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33388490 - 33388268
Alignment:
| Q |
1 |
gtgctggaaaaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgaaatc |
100 |
Q |
| |
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|||| |||| ||| ||||| |||||||||| |||||| ||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33388490 |
gtgccggaagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacctatcctgaaattttgagatc |
33388391 |
T |
|
| Q |
101 |
taatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcccgcaccagaaaccttaatgcgc |
200 |
Q |
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|||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| || || |||||||||||||| |
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| T |
33388390 |
taatcttgcaaacacggttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaatgcgt |
33388291 |
T |
|
| Q |
201 |
gctttggaagtgttgaattactt |
223 |
Q |
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||||||||||||||||||||||| |
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|
| T |
33388290 |
gctttggaagtgttgaattactt |
33388268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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