View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_314 (Length: 228)
Name: NF11280A_low_314
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_314 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 20206168 - 20205947
Alignment:
| Q |
1 |
gcctcctcttttctgcaactatcatggcacaagactctccattatatttgaatacaatttgtcccaacaacgttaccaaacccagcagcaccttccaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20206168 |
gcctcctcttttctgcaactatcatggcacaagactctccattatatttgaatacaatttgtcccaacaacgttaccaaacccagcagcaccttccaaag |
20206069 |
T |
|
| Q |
101 |
caatctcttaaacctcttctcttcattgtcatcaatagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20206068 |
caatctcttaaacctcttctcttcattgtcatcaaaagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtc |
20205969 |
T |
|
| Q |
201 |
tatggatcgttcatgtgtagag |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
20205968 |
tatggatcgttcatgtgtagag |
20205947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 22100191 - 22099970
Alignment:
| Q |
1 |
gcctcctcttttctgcaactatcatggcacaagactctccattatatttgaatacaatttgtcccaacaacgttaccaaacccagcagcaccttccaaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22100191 |
gcctcctcttttctgcaactatcatggcacaagactctccattatatttgaatacaatttgtcccaacaacgttaccaaacccagcagcaccttccaaag |
22100092 |
T |
|
| Q |
101 |
caatctcttaaacctcttctcttcattgtcatcaatagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtc |
200 |
Q |
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| T |
22100091 |
caatctcttaaacctcttctcttcattgtcatcaaaagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtc |
22099992 |
T |
|
| Q |
201 |
tatggatcgttcatgtgtagag |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
22099991 |
tatggatcgttcatgtgtagag |
22099970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 21972706 - 21972508
Alignment:
| Q |
24 |
atggcacaagactctccattatatttgaatacaatttgtcccaacaacgttaccaaacccagcagcaccttccaaagcaatctcttaaacctcttctctt |
123 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||| || |
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| T |
21972706 |
atggcacaagactctccattatttctgaatacaatttgtcccatcaacgttaccaaaccaagcagcaccttccaaagcaatctcataaacctcttcaatt |
21972607 |
T |
|
| Q |
124 |
cattgtcatcaatagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtctatggatcgttcatgtgtagag |
222 |
Q |
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|||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||||| | || | ||||||||||||| |||||||||||||| |
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| T |
21972606 |
cattgtcatcaaaagccataggcaacaccaaattctacaacaccacagtcactagtataaattcgtccgtatccgtctatggattgttcatgtgtagag |
21972508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 20128444 - 20128340
Alignment:
| Q |
118 |
tctcttcattgtcatcaatagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtctatggatcgttcatgtg |
217 |
Q |
| |
|
||||||| || ||||||| |||| || |||||| ||||||||||| ||||||||||||||||| || ||||| || |||||||||| ||||||||| |
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| T |
20128444 |
tctcttctttatcatcaaaagccgtcggcaacaccgaattctacaacaccacagtcactagtataaacccctctgattctgtctatggattgttcatgtg |
20128345 |
T |
|
| Q |
218 |
tagag |
222 |
Q |
| |
|
|||| |
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|
| T |
20128344 |
cagag |
20128340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 22204426 - 22204530
Alignment:
| Q |
118 |
tctcttcattgtcatcaatagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtctatggatcgttcatgtg |
217 |
Q |
| |
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||||||| || ||||||| |||| || |||||| ||||||||||| ||||||||||||||||| || ||||| || |||||||||| ||||||||| |
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| T |
22204426 |
tctcttctttatcatcaaaagccgtcggcaacaccgaattctacaacaccacagtcactagtataaacccctctgattctgtctatggattgttcatgtg |
22204525 |
T |
|
| Q |
218 |
tagag |
222 |
Q |
| |
|
|||| |
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|
| T |
22204526 |
cagag |
22204530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 20238636 - 20238545
Alignment:
| Q |
126 |
ttgtcatcaatagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtctatggatcgttcatgtg |
217 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||||||||| |||||||||||| ||||||| |||| || |||||||||| ||||||||| |
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| T |
20238636 |
ttgtcatcaaaagccatagacaacactgaattctacaacaccacagtcactagtgtaaatcccactgattctgtctatggattgttcatgtg |
20238545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 22132620 - 22132529
Alignment:
| Q |
126 |
ttgtcatcaatagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtctatggatcgttcatgtg |
217 |
Q |
| |
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|||||||||| ||||| || ||||| ||||||||||| |||||||||||| ||||||| |||| || |||||||||| ||||||||| |
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| T |
22132620 |
ttgtcatcaaaagccatagacaacactgaattctacaacaccacagtcactagtgtaaatcccactgattctgtctatggattgttcatgtg |
22132529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 4742 - 4819
Alignment:
| Q |
87 |
agcaccttccaaagcaatctcttaaacctcttctcttcattgtcatcaatagccaaaggaaacaccaaattctacaac |
164 |
Q |
| |
|
||||||||||||| |||||| | | |||| | ||||| |||||||||| ||||| ||| |||||| ||||||||||| |
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| T |
4742 |
agcaccttccaaactaatctcatgaccctcctttcttccttgtcatcaaaagccacaggcaacaccgaattctacaac |
4819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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