View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_323 (Length: 226)

Name: NF11280A_low_323
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_323
NF11280A_low_323
[»] chr3 (10 HSPs)
chr3 (19-191)||(22632527-22632699)
chr3 (19-191)||(22468610-22468782)
chr3 (19-191)||(22631131-22631303)
chr3 (19-187)||(22431813-22431978)
chr3 (28-190)||(22443413-22443572)
chr3 (73-191)||(22358721-22358839)
chr3 (19-191)||(22368574-22368743)
chr3 (74-191)||(22636223-22636340)
chr3 (73-158)||(22437350-22437435)
chr3 (113-153)||(22370906-22370946)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 22632527 - 22632699
Alignment:
Q  19 atcttgtaagctatttggagacgaagaatcttagttttcaccaagtcaacagctccagcagcacatccaggatcaaaagattgtcgttcctaaaggaaga 118  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| |||||| ||| ||||    
T  22632527 atcttgtcagcaatttggagacgaagaatcttagttttcaccaagtcaatagctccagtagcacatccaggatcagaagattgttgttcctcaagaaaga 22632626  T
Q  119 tataatcagcaatgacatcttctatgtgaaaagatgcttcaatcagctgcttgatcatgtctttgattttctt 191  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22632627 tataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagctgcttgatcatgtctttgattttctt 22632699  T

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Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 22468610 - 22468782
Alignment:
Q  19 atcttgtaagctatttggagacgaagaatcttagttttcaccaagtcaacagctccagcagcacatccaggatcaaaagattgtcgttcctaaaggaaga 118  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| ||| ||||    
T  22468610 atcttgtaagttatttggagacgaaggatcttagttttcaccaagtcaacagcaccagcagcacatccaggatcagaagattgttgttcctcaagtaaga 22468709  T
Q  119 tataatcagcaatgacatcttctatgtgaaaagatgcttcaatcagctgcttgatcatgtctttgattttctt 191  Q
    |||||||| |||  ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  22468710 tataatcatcaaccacatcttctatgtgataagatgcttctatcagctgcttgatcatgtctttgattttctt 22468782  T

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Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 22631131 - 22631303
Alignment:
Q  19 atcttgtaagctatttggagacgaagaatcttagttttcaccaagtcaacagctccagcagcacatccaggatcaaaagattgtcgttcctaaaggaaga 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||  ||| |||||| | ||||||    
T  22631131 atcttgtaagcaatttggagacgaagaatcttagttttcaccaagtcaacggctccagcagcacatccaggatcaggagcatgttgttcctcatggaaga 22631230  T
Q  119 tataatcagcaatgacatcttctatgtgaaaagatgcttcaatcagctgcttgatcatgtctttgattttctt 191  Q
    |||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  22631231 tataatcatcaatgacatcttccatgtggaaagatgcttctatcagctgcttgatcatgtctttgattttctt 22631303  T

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Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 22431813 - 22431978
Alignment:
Q  19 atcttgtaagctatttggagacgaagaatcttagttttcaccaagtcaacagctccagcagcacatccaggatcaaaagattgtcgttcctaaaggaaga 118  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| |   |||||||| |||||||||||| |||||||| |||| | ||||||||    
T  22431813 atcttgtaagctatttggagacgaagaatcttagttttgatcaagtcaaga---ccagcagcgcatccaggatcagaagattgttgttcttcaaggaaga 22431909  T
Q  119 tataatcagcaatgacatcttctatgtgaaaagatgcttcaatcagctgcttgatcatgtctttgattt 187  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| |||||| |  |||||||||    
T  22431910 tataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgattt 22431978  T

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Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 22443413 - 22443572
Alignment:
Q  28 gctatttggagacgaagaatcttagttttcaccaagtcaacagctccagcagcacatccaggatcaaaagattgtcgttcctaaaggaagatataatcag 127  Q
    ||||||||||||||||||||||||||||| | |||||||| |   ||||||||||||||| ||||| |||||||  |||| | ||||||||||||||||     
T  22443413 gctatttggagacgaagaatcttagttttgatcaagtcaaga---ccagcagcacatccaagatcagaagattgatgttcttcaaggaagatataatcat 22443509  T
Q  128 caatgacatcttctatgtgaaaagatgcttcaatcagctgcttgatcatgtctttgattttct 190  Q
    |||||||||||||||| |||||||||||||| |||| ||| ||||||||  ||||||||||||    
T  22443510 caatgacatcttctatatgaaaagatgcttctatcaactgtttgatcattgctttgattttct 22443572  T

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Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 22358721 - 22358839
Alignment:
Q  73 ccagcagcacatccaggatcaaaagattgtcgttcctaaaggaagatataatcagcaatgacatcttctatgtgaaaagatgcttcaatcagctgcttga 172  Q
    |||||||||||||||||||||  ||  ||| |||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  22358721 ccagcagcacatccaggatcaggagcatgttgttcctcaagaaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgcttga 22358820  T
Q  173 tcatgtctttgattttctt 191  Q
    |||||||||||||||||||    
T  22358821 tcatgtctttgattttctt 22358839  T

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Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 22368574 - 22368743
Alignment:
Q  19 atcttgtaagctatttggagacgaagaatcttagttttcaccaagtcaacagctccagcagcacatccaggatcaaaagattgtcgttcctaaaggaaga 118  Q
    ||||| ||||| ||||||||||| ||  |  ||||||| | ||||||||||||   ||||||||||||||| ||| |||||||  |||||| ||||||||    
T  22368574 atcttataagcaatttggagacgtagttttgtagttttgagcaagtcaacagc---agcagcacatccaggttcagaagattgatgttcctcaaggaaga 22368670  T
Q  119 tataatcagcaatgacatcttctatgtgaaaagatgcttcaatcagctgcttgatcatgtctttgattttctt 191  Q
    |||||||| ||||||||||||||||||||||||||| ||| |||||||||||  |||||||||||||||||||    
T  22368671 tataatcatcaatgacatcttctatgtgaaaagatgtttctatcagctgcttcgtcatgtctttgattttctt 22368743  T

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Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 22636223 - 22636340
Alignment:
Q  74 cagcagcacatccaggatcaaaagattgtcgttcctaaaggaagatataatcagcaatgacatcttctatgtgaaaagatgcttcaatcagctgcttgat 173  Q
    |||||||||| |||||||||  ||  ||| |||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  22636223 cagcagcacaaccaggatcaggagcatgttgttcctcaagaaagatataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagctgcttgat 22636322  T
Q  174 catgtctttgattttctt 191  Q
    ||||||||||||||||||    
T  22636323 catgtctttgattttctt 22636340  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 22437350 - 22437435
Alignment:
Q  73 ccagcagcacatccaggatcaaaagattgtcgttcctaaaggaagatataatcagcaatgacatcttctatgtgaaaagatgcttc 158  Q
    ||||| |||||||||||||||  || |||| |||||| | |||||||||||||| |||||||||||||||||| ||||||||||||    
T  22437350 ccagcggcacatccaggatcaggagcttgttgttcctcatggaagatataatcatcaatgacatcttctatgtcaaaagatgcttc 22437435  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 22370906 - 22370946
Alignment:
Q  113 ggaagatataatcagcaatgacatcttctatgtgaaaagat 153  Q
    |||||||||| ||| |||||||||||||||||| |||||||    
T  22370906 ggaagatatattcatcaatgacatcttctatgtaaaaagat 22370946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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