View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_327 (Length: 225)

Name: NF11280A_low_327
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_327
NF11280A_low_327
[»] chr6 (10 HSPs)
chr6 (4-205)||(26975524-26975725)
chr6 (4-201)||(26636219-26636416)
chr6 (4-201)||(26742185-26742382)
chr6 (4-205)||(26950316-26950517)
chr6 (4-205)||(26959699-26959900)
chr6 (21-205)||(27664613-27664797)
chr6 (4-205)||(26849285-26849486)
chr6 (4-202)||(25074443-25074638)
chr6 (4-112)||(31288878-31288986)
chr6 (149-205)||(31288986-31289042)
[»] chr2 (1 HSPs)
chr2 (4-202)||(17992626-17992824)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 26975524 - 26975725
Alignment:
Q  4 atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa 103  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  26975524 atgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa 26975623  T
Q  104 atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaaca 203  Q
    ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26975624 atctcgaatattaaaagtgaactcactactagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaaca 26975723  T
Q  204 ct 205  Q
    ||    
T  26975724 ct 26975725  T

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Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 26636219 - 26636416
Alignment:
Q  4 atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa 103  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26636219 atgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaa 26636318  T
Q  104 atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  |||||||| |||||||    
T  26636319 atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgggcaagacaa 26636416  T

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Target: chr6; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 26742185 - 26742382
Alignment:
Q  4 atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa 103  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26742185 atgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaa 26742284  T
Q  104 atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  |||||||| |||||||    
T  26742285 atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgggcaagacaa 26742382  T

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Target: chr6; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 26950316 - 26950517
Alignment:
Q  4 atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26950316 atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaa 26950415  T
Q  104 atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaaca 203  Q
    ||||||||||||||||||||| ||||||  ||| ||||| || |  |||||||||| ||| ||||||||||||||||||||||||||||| |||||||||    
T  26950416 atctcgaatatcagaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactgggggaatgggaaagacaaca 26950515  T
Q  204 ct 205  Q
    ||    
T  26950516 ct 26950517  T

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Target: chr6; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 26959699 - 26959900
Alignment:
Q  4 atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa 103  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||| ||||| |||||    
T  26959699 atgagtatgaacgtgattttattgaaaaaatagttacagacgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctcaa 26959798  T
Q  104 atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaaca 203  Q
    ||||||||||||| ||||||| ||||||  ||| ||||| || |  |||||||||| ||| |||||||||||||||||||| |||||||| |||||||||    
T  26959799 atctcgaatatcaaaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactggaggaatgggaaagacaaca 26959898  T
Q  204 ct 205  Q
    ||    
T  26959899 ct 26959900  T

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Target: chr6; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 27664797 - 27664613
Alignment:
Q  21 tttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaaatctcgaatatcagaag 120  Q
    ||||||||| |||||||||||||||||||| ||||||||||||    || | ||||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  27664797 tttattgaagaaatagttacagacgtctccaacaagatcaaccgttgtcatttacatgttgctgagtaccttgttggactcgaatctcgaatatcagaag 27664698  T
Q  121 tgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaacact 205  Q
    |||| ||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||| ||  ||||||||||||||||    
T  27664697 tgaattcacttctagacttgggatgtaccgatggagtctacataataggaatccttggaactggaggtctgggtaagacaacact 27664613  T

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Target: chr6; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 26849285 - 26849486
Alignment:
Q  4 atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa 103  Q
    |||||||||||| | |||||||||  ||||||||||  || |||||| ||||||||||||| |||||| | ||||||||||||||||| |||||||| ||    
T  26849285 atgaatatgaacaccattttattgggaaaatagttaaggatgtctccaacaagatcaaccatgttcctttgcatgttgctgattaccttgttggacttaa 26849384  T
Q  104 atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaaca 203  Q
    ||||||||||||||||||||| ||||||||||| ||||  |||| |||||||||||  | ||||||||||||||||||||| |||||||| || ||||||    
T  26849385 atctcgaatatcagaagtgaattcacttctagaattggaatctaatgatggagtctggaaaataggaatccttggaactggaggaatgggaaaaacaaca 26849484  T
Q  204 ct 205  Q
    ||    
T  26849485 ct 26849486  T

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Target: chr6; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 25074443 - 25074638
Alignment:
Q  4 atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa 103  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||  ||||| |||||||| |||||||||| ||||| ||       
T  25074443 atgaatatgaacgtgattttattgaaaaaatagttagagacgtctccaacaagattaaccaaattcctttacatgttactgattaccttgttggtcttcg 25074542  T
Q  104 atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaac 202  Q
    ||||||||| ||||||||||| ||||||||||||||||| | ||   ||||||| | ||||||||||||| |||||||||| |||||||| ||||||||    
T  25074543 atctcgaatttcagaagtgaattcacttctagacttgggatata---atggagtatgcataataggaatcgttggaactggtggaatgggcaagacaac 25074638  T

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Target: chr6; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 31288878 - 31288986
Alignment:
Q  4 atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa 103  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||| ||||| |||||    
T  31288878 atgaatatgaacgagattttattgaaaaaatagttacagatgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctcaa 31288977  T
Q  104 atctcgaat 112  Q
    |||||||||    
T  31288978 atctcgaat 31288986  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 31288986 - 31289042
Alignment:
Q  149 tgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaacact 205  Q
    ||||||||||| |||||||||||| ||||||||||| |||| |||||| ||||||||    
T  31288986 tgatggagtctgcataataggaatacttggaactggaggaaggggtaaaacaacact 31289042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 17992824 - 17992626
Alignment:
Q  4 atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa 103  Q
    ||||||||||||| |||||||||||||||||||||||||||   ||| ||||||| |||||||||||  |||||||||| ||||||||  |||| |||||    
T  17992824 atgaatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattggtctcaa 17992725  T
Q  104 atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaac 202  Q
    ||||||||||||||||||||| ||||||||||||||||  | || |||||| |||| |||||||||||||||||| ||||| |||||||| ||||||||    
T  17992724 atctcgaatatcagaagtgaattcacttctagacttggaatataatgatggtgtctgcataataggaatccttggtactggtggaatgggcaagacaac 17992626  T

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