View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_333 (Length: 224)
Name: NF11280A_low_333
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_333 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 40810211 - 40809993
Alignment:
| Q |
1 |
tcaaaaaagtacttttccaatgcagaaatcaggttacggttcagatggaatatacaggtccttaagaccttcccttatcttaccaaaaaatccaaacctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40810211 |
tcaaaaaagtacttttccaatgcagaaatcaggttacggttcagatggaatatacaggtccttaagaccttcccttatcttaccaaaaaatccaaacctc |
40810112 |
T |
|
| Q |
101 |
tctctcgtaacacacctcttcaacaaagtcacttcttccccaaacaaaaccgctcttatagatgccgattcttctcaaacactaaccttcgctcaattaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40810111 |
tctctcgtaacacacctcttcaacaaagtcacttcttccccaaacaaaaccgctcttatagatgccgattcttctcaaacactaaccttcgctcaattaa |
40810012 |
T |
|
| Q |
201 |
aatcccttacaattaaact |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
40810011 |
aatcccttacaattaaact |
40809993 |
T |
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