View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_336 (Length: 222)
Name: NF11280A_low_336
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_336 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14740829 - 14740608
Alignment:
| Q |
1 |
ggaaagactactacacaaatccaatcacatagaaaggctttgcattgaaatacttaaaattactgttgatgctaacaaatttacttctttagtatcttct |
100 |
Q |
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| T |
14740829 |
ggaaagactactacacaaatccaatcacatagaaaggctttgcattgaaatacttaaaattactgttgatgttaacaaatttactactttagtatcttct |
14740730 |
T |
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| Q |
101 |
gcagcgaagcacagtgtgcgtgaccttcaactttcaatagatgataaaaaatatctagatacgatatttgtgttacccaactgtttatcagctttccctt |
200 |
Q |
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| T |
14740729 |
gcagcgaagcacagtgtgcgtgaccttcaactttcaatagatgataaaaaatatctagatacgatatttgtgttacccaactgtttatcagctttccctt |
14740630 |
T |
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| Q |
201 |
cattgaataagttgtttttaga |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
14740629 |
cattgaataagttgtttttaga |
14740608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 17585374 - 17585593
Alignment:
| Q |
1 |
ggaaagactactacacaaatccaatcacatagaaaggctttgcattgaaatacttaaaattactgttgatgctaacaaatttacttctttagtatcttct |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
17585374 |
ggaaagactactacacaaatccaatcacgtagaaaggctttgcattgaaatacttaaaattactattgatgctaacaaagttacttctttagtatcttct |
17585473 |
T |
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| Q |
101 |
gcagcgaagcacagtgtgcgtgaccttcaactttcaatagatgataaaaaatatctagatacgatatttgtgttacccaactgtttatcagctttccctt |
200 |
Q |
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| T |
17585474 |
gcagcgaagcacaatgtgcatgatcttcaactttcaatagatgataaaaaatatctagatacgatatttgtgttacccaactgtttatcagttttccctt |
17585573 |
T |
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| Q |
201 |
cattgaataagttgttttta |
220 |
Q |
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| T |
17585574 |
cattgaataagttgttttta |
17585593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 11062578 - 11062634
Alignment:
| Q |
163 |
gatatttgtgttacccaactgtttatcagctttcccttcattgaataagttgttttta |
220 |
Q |
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| T |
11062578 |
gatatttgtgttacccgattgttg-tcagctttccgttcattgaataagttgttttta |
11062634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 54220279 - 54220237
Alignment:
| Q |
4 |
aagactactacacaaatccaatcacatagaaaggctttgcatt |
46 |
Q |
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| T |
54220279 |
aagactacttcacaaatctaatcacatagaaaggctctgcatt |
54220237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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