View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_337 (Length: 222)
Name: NF11280A_low_337
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_337 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 13230033 - 13229817
Alignment:
| Q |
6 |
attctactgaagggatcaagaaggagaaattgaaggaaaaatgtatagctcttacatttttgtgattctatctttgttcattcttgtgtctaaagaaaat |
105 |
Q |
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| T |
13230033 |
attctattgaaggaatcaagtaggagaaattgaagtaaaaatgtatagctcttacatttttgtgattctatctttgttcattcttgtgtctatagaaaat |
13229934 |
T |
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| Q |
106 |
acagtgcttgtacatggtgatgatcctactgatggttttacctctgtgccattgactgaagcaaattttgaggtgcagaaaccatacaatataccaattg |
205 |
Q |
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| T |
13229933 |
acagtgcttgtacatggtgatgatcctactgatggttttacctctgtgccattgactgaagcaaattttgaggtgcagaaaccatacaatataccaattg |
13229834 |
T |
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| Q |
206 |
agaaaaggtatagcttc |
222 |
Q |
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||||||||||||||||| |
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| T |
13229833 |
agaaaaggtatagcttc |
13229817 |
T |
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