View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_338 (Length: 222)
Name: NF11280A_low_338
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_338 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 40456787 - 40456640
Alignment:
| Q |
19 |
atcacatgtgataccaattagtccttgaacaaatgacaacaagaaggaatcttagggtcagaattccatctctttgctggttatttctgtacatatgtgg |
118 |
Q |
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| T |
40456787 |
atcacatgtgataccaattagtccttgaacaaatgacaacaagaaggaatcttagggtcagaattccatctctttgctggttatttctgtatatatgtgg |
40456688 |
T |
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| Q |
119 |
tttgtaagtggttgaatttggatgtttactttctcttgccagtagatt |
166 |
Q |
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| T |
40456687 |
tttgtaagtggttgaatttggatgtttactttctcttgccagtagatt |
40456640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 40482148 - 40482086
Alignment:
| Q |
104 |
tctgtacatatgtggtttgtaagtggttgaatttggatgtttactttctcttgccagtagatt |
166 |
Q |
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| T |
40482148 |
tctgtatatatgtggtttgtaagtggttgaatttggatgtttactttctcttgccagtagatt |
40482086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 40362953 - 40363005
Alignment:
| Q |
19 |
atcacatgtgataccaattagtccttgaacaaatgacaacaagaaggaatctt |
71 |
Q |
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| T |
40362953 |
atcaaatgtgataccaattagtccttgcacaaatgataactagaagaaatctt |
40363005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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