View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_341 (Length: 221)
Name: NF11280A_low_341
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_341 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44187490 - 44187271
Alignment:
| Q |
1 |
ggtgattgaggagtttggtgttagagtagaaaattattgttgccaaatggtagtttacaagaaaaaccttcttccgtttagagttgcagacaattaattt |
100 |
Q |
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| T |
44187490 |
ggtgattgaggagattggtgttagagtagaaaattattgttgccaaatggtagtttacaagaaaaaccttctttcgtttggagttgcagacaattaattt |
44187391 |
T |
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| Q |
101 |
cttttgtagcctttgtgtggagttctctccatcaaggtttatgagtctagttattaggatttaatatttgattgcaaagttgaactttatgaagttactt |
200 |
Q |
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| T |
44187390 |
cttttgtagcctttgtgtggagttctcaccct-aaggcttatgagtctagttcttaggatttaatattagattgcaaagttgaactttatgaagttactt |
44187292 |
T |
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| Q |
201 |
atatgcaaaatggcttgtcag |
221 |
Q |
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|||||| ||| | |||||||| |
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| T |
44187291 |
atatgccaaacgacttgtcag |
44187271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 19162988 - 19162862
Alignment:
| Q |
93 |
attaatttcttttgtagcctttgtgtggagttctctccatcaaggtttatgagtctagttattaggatttaatatttgattg-caaagttgaactttatg |
191 |
Q |
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| T |
19162988 |
attaattgcttttatagcctttttgtgaagttttcaccctcaaggtttatgagtctagttcttaggatttgatattctattgcctaagttgaactttctg |
19162889 |
T |
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| Q |
192 |
aagttacttatatgcaaaatggcttgt |
218 |
Q |
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| T |
19162888 |
aagttgcttatatgcaaactggcttgt |
19162862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 28867005 - 28866885
Alignment:
| Q |
54 |
tttacaagaaaaaccttcttccgtttagagttgcagacaattaatttcttttgtagcctttgtgtggagttctctccatcaaggtttatgagtctagtta |
153 |
Q |
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| T |
28867005 |
tttataagaaaaaccttcttccatttcgagttatagacaattaattgtatttgtagcctttgtgtggagtttttaccctcaagg-ttaggagtctagttc |
28866907 |
T |
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| Q |
154 |
ttaggatttaatatttgattgc |
175 |
Q |
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| T |
28866906 |
ttaggatttgatatttcattgc |
28866885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 28995192 - 28995312
Alignment:
| Q |
54 |
tttacaagaaaaaccttcttccgtttagagttgcagacaattaatttcttttgtagcctttgtgtggagttctctccatcaaggtttatgagtctagtta |
153 |
Q |
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| T |
28995192 |
tttacaagaaaaatcttcttccatttggagttatagacaattaattgcatttctagcctttgtgtggaattttcaccctcaagg-tcaggagtctagttc |
28995290 |
T |
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| Q |
154 |
ttaggatttaatatttgattgc |
175 |
Q |
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||||||||| |||||| ||||| |
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| T |
28995291 |
ttaggattttatatttcattgc |
28995312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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