View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_352 (Length: 215)
Name: NF11280A_low_352
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_352 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 17167665 - 17167492
Alignment:
| Q |
21 |
atgcaatcccagccagctcatcaaattgccccacaccttcctagcaaaatcacaatgcaggaacaaatggttggccaattccaactccccttcacacatc |
120 |
Q |
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| T |
17167665 |
atgcaatcccagccatctcatcaaattgccccacaccttcctagcaaaatcacaatgcaggaacaaatggttggccaattccaactccccttcacacatc |
17167566 |
T |
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| Q |
121 |
acacaatctaaagagacatccggtgataacacttgcattagggacagattagcttttgtcgggagcctattatg |
194 |
Q |
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| T |
17167565 |
acacaatctaaagagacatccggtgatagcacttgccttagggaaagattaccttttgtcgggagccttttatg |
17167492 |
T |
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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 20040593 - 20040675
Alignment:
| Q |
50 |
cccacaccttcctagcaaaatcacaatgcaggaacaaatggttggccaattccaactccccttcacacatcacacaatctaaa |
132 |
Q |
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| T |
20040593 |
cccacaccttcatggcaaactcacaatggaggaacaaatggttagccgattccttttccccttcacacatcacacaatctaaa |
20040675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 10509089 - 10509010
Alignment:
| Q |
50 |
cccacaccttcctagcaaaatcacaatgcaggaacaaatggttggccaattccaactccccttcacacatcacacaatct |
129 |
Q |
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| T |
10509089 |
cccacaccttcatcgcaaattcacaatggagaaacaagtgattagccgatttcaactcccctaaacacatcacacaatct |
10509010 |
T |
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