View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_355 (Length: 214)

Name: NF11280A_low_355
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_355
NF11280A_low_355
[»] chr3 (21 HSPs)
chr3 (14-102)||(19849354-19849442)
chr3 (14-100)||(20015873-20015959)
chr3 (27-100)||(19858429-19858502)
chr3 (121-192)||(19848795-19848866)
chr3 (32-100)||(20046480-20046548)
chr3 (49-100)||(17115073-17115124)
chr3 (31-96)||(24839666-24839731)
chr3 (28-100)||(19818920-19818992)
chr3 (20-96)||(19944078-19944154)
chr3 (21-105)||(19956439-19956523)
chr3 (121-189)||(20036845-20036913)
chr3 (124-192)||(26646818-26646886)
chr3 (116-195)||(20005219-20005298)
chr3 (21-100)||(20036282-20036361)
chr3 (34-94)||(19832235-19832295)
chr3 (137-189)||(19838195-19838247)
chr3 (137-189)||(19955886-19955938)
chr3 (124-195)||(19818362-19818433)
chr3 (137-195)||(19812085-19812143)
chr3 (137-190)||(26651843-26651896)
chr3 (137-189)||(19950935-19950987)
[»] chr5 (2 HSPs)
chr5 (14-100)||(9815394-9815480)
chr5 (14-100)||(26354599-26354685)
[»] chr8 (1 HSPs)
chr8 (108-146)||(22685874-22685912)
[»] chr7 (5 HSPs)
chr7 (49-98)||(12497567-12497616)
chr7 (49-98)||(12521432-12521481)
chr7 (32-100)||(12579781-12579849)
chr7 (32-99)||(12519486-12519553)
chr7 (50-100)||(12495703-12495753)
[»] chr4 (3 HSPs)
chr4 (43-100)||(6397440-6397497)
chr4 (143-183)||(6397999-6398039)
chr4 (143-183)||(6398078-6398118)
[»] chr1 (1 HSPs)
chr1 (134-189)||(1717025-1717080)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 19849442 - 19849354
Alignment:
Q  14 aagaatatcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggat 102  Q
    ||||| ||||| |||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19849442 aagaaaatcatccatagccgagtctaatgccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggat 19849354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 20015873 - 20015959
Alignment:
Q  14 aagaatatcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 100  Q
    ||||| |||||  ||||||||||||||  ||| | ||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  20015873 aagaaaatcatcaatagctgagtctaatgccaccataacattgtcaattttcaaagcctgaaccttatgccacctaaacaataaagg 20015959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 19858502 - 19858429
Alignment:
Q  27 atagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 100  Q
    ||||| ||||||||  ||||| |||||||||||| ||||||||||| |||||||||||| ||||||||||||||    
T  19858502 atagccgagtctaatgccaacttaacattgtcaactttcaaggccttaaccttatgccacctaaacaataaagg 19858429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 19848866 - 19848795
Alignment:
Q  121 aacaggatcaccacctaaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggt 192  Q
    |||||||| ||| |||| ||||||||||||||||||||| | |||||| |||||||||| ||||||||||||    
T  19848866 aacaggataaccccctagaaccatgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggt 19848795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 20046548 - 20046480
Alignment:
Q  32 tgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 100  Q
    |||||||||  ||||| ||||||| ||||||||||| || |||||||||||||| ||||||||||||||    
T  20046548 tgagtctaatgccaacttaacattatcaattttcaatgcgtgaaccttatgccacctaaacaataaagg 20046480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 17115124 - 17115073
Alignment:
Q  49 taacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 100  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  17115124 taacattgtcaattttcacggcctgaaccctatgccacctaaacaataaagg 17115073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 24839666 - 24839731
Alignment:
Q  31 ctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaata 96  Q
    ||||||||||  ||||||| |||||||||||||||||||||| ||| |||||||| || |||||||    
T  24839666 ctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccacctcaacaata 24839731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 19818992 - 19818920
Alignment:
Q  28 tagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 100  Q
    |||| ||||||||  ||| ||||||||||||||||| |||||||||||| | |||||| |||||||| |||||    
T  19818992 tagccgagtctaatgccatcctaacattgtcaatttccaaggcctgaacatcatgccacctaaacaaaaaagg 19818920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 19944154 - 19944078
Alignment:
Q  20 atcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaata 96  Q
    |||||| |||||||| |||||  ||||||  |||||||||||||||||||||| ||| |||||||| || |||||||    
T  19944154 atcattgatagctgaatctaatgccaaccccacattgtcaattttcaaggccttaacattatgccacctcaacaata 19944078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 19956523 - 19956439
Alignment:
Q  21 tcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggattcc 105  Q
    |||| |||||| ||||||||  ||| |||||||||||||| | |||||| || |||||||||||| |||||||| ||||| ||||    
T  19956523 tcatccatagccgagtctaatgccatcctaacattgtcaactatcaagggcttaaccttatgccacctaaacaaaaaagggttcc 19956439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 20036845 - 20036913
Alignment:
Q  121 aacaggatcaccacctaaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 189  Q
    |||||||| ||| |||| ||||||||||||||||||| | | |||||| |||||||||| |||||||||    
T  20036845 aacaggataacctcctagaaccatgatatcctccaaaatgactgttgcttcaccaaaggaaaacacaaa 20036913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 26646886 - 26646818
Alignment:
Q  124 aggatcaccacctaaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggt 192  Q
    ||||| ||| || |||||||||||||||||||||||||  ||||| |||||||||| || |||||||||    
T  26646886 aggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggt 26646818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 20005219 - 20005298
Alignment:
Q  116 gtgaaaacaggatcaccacctaaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggtgtt 195  Q
    ||||||||||||| ||| || ||||| |||| ||| |||||||| | |||||| ||||||||  ||||||||||||||||    
T  20005219 gtgaaaacaggataaccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtt 20005298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 20036282 - 20036361
Alignment:
Q  21 tcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 100  Q
    |||| |||||| ||||||||  ||| |||||||||||||||  |||||| || |||||||||||| |||||||| |||||    
T  20036282 tcatccatagccgagtctaatgccatcctaacattgtcaatcatcaagggcttaaccttatgccacctaaacaaaaaagg 20036361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 19832295 - 19832235
Alignment:
Q  34 agtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaa 94  Q
    |||||||  ||| ||||||||||||||||  |||||||| |||||||||||| ||||||||    
T  19832295 agtctaatgccatcctaacattgtcaattaccaaggccttaaccttatgccacctaaacaa 19832235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 19838247 - 19838195
Alignment:
Q  137 aaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 189  Q
    |||||||||| ||| |||||||| | ||||||||||||||| |||||||||||    
T  19838247 aaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaa 19838195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 19955938 - 19955886
Alignment:
Q  137 aaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 189  Q
    |||||||||| ||| |||||||| | ||||||||||||||| |||||||||||    
T  19955938 aaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaa 19955886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 19818433 - 19818362
Alignment:
Q  124 aggatcaccacctaaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggtgtt 195  Q
    ||||| ||| || ||||| |||| |||||||||||| |  |||||||||||||| ||||| |||||||||||    
T  19818433 aggataaccccccaaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgtt 19818362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 19812143 - 19812085
Alignment:
Q  137 aaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggtgtt 195  Q
    |||||||| |||||||||||||| |  ||||| |||||||| ||||| |||||||||||    
T  19812143 aaaaccataatatcctccaaagtgatagttgcttcaccaaatggaaaaacaaaggtgtt 19812085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 26651896 - 26651843
Alignment:
Q  137 aaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaag 190  Q
    ||||| |||| |||||||||||| | ||||||||||||||| ||||| ||||||    
T  26651896 aaaacaatgacatcctccaaagtgattgttgcctcaccaaaaggaaaaacaaag 26651843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 19950987 - 19950935
Alignment:
Q  137 aaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 189  Q
    |||||||| | |||||||||||| |  |||||||||||||| |||||||||||    
T  19950987 aaaaccataacatcctccaaagtgatagttgcctcaccaaatggaaacacaaa 19950935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 9815480 - 9815394
Alignment:
Q  14 aagaatatcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 100  Q
    ||||| ||||| |||||| ||||||||  ||| | |||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  9815480 aagaaaatcatccatagccgagtctaatgccagcttaacattgtcaattttcaaggcctgaaccttatgtcacctaaacaataaagg 9815394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 26354599 - 26354685
Alignment:
Q  14 aagaatatcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 100  Q
    ||||| |||||| |||||  |||||||  ||| | |||||||||||||||||||||| || ||| ||||||||||||||||||||||    
T  26354599 aagaaaatcattgatagccaagtctaattccagcttaacattgtcaattttcaaggcttgtaccctatgccatctaaacaataaagg 26354685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 22685874 - 22685912
Alignment:
Q  108 gaagtgaagtgaaaacaggatcaccacctaaaaccatga 146  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22685874 gaagtgaagtgaaaacaggatcaccacctaaaaccatga 22685912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 12497616 - 12497567
Alignment:
Q  49 taacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaa 98  Q
    |||||||| |||||||||||||| ||||||||||||| || |||||||||    
T  12497616 taacattgccaattttcaaggccagaaccttatgccacctcaacaataaa 12497567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 12521481 - 12521432
Alignment:
Q  49 taacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaa 98  Q
    |||||||| |||||||||||||| ||||||||||||| || |||||||||    
T  12521481 taacattgccaattttcaaggccagaaccttatgccacctcaacaataaa 12521432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 12579781 - 12579849
Alignment:
Q  32 tgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 100  Q
    |||||||||  | ||| ||||||||||||||| ||||||||||||||||| | | |||| |||||||||    
T  12579781 tgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagg 12579849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 12519486 - 12519553
Alignment:
Q  32 tgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaag 99  Q
    |||||||||  | ||| ||||||||||||||| ||||||||||||||||| | | |||| ||||||||    
T  12519486 tgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaag 12519553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 12495703 - 12495753
Alignment:
Q  50 aacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 100  Q
    |||||||||||||| ||||||||||||||||| | | |||| |||||||||    
T  12495703 aacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagg 12495753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 6397440 - 6397497
Alignment:
Q  43 ccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 100  Q
    ||||| ||| |||||||||||| |||||||||||||||| ||| ||||| ||||||||    
T  6397440 ccaacttaatattgtcaattttaaaggcctgaaccttataccacctaaaaaataaagg 6397497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 6397999 - 6398039
Alignment:
Q  143 atgatatcctccaaagtaagtgttgcctcaccaaagggaaa 183  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  6397999 atgatatcctccaaagttattgttgcctcaccaaagggaaa 6398039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 6398118 - 6398078
Alignment:
Q  143 atgatatcctccaaagtaagtgttgcctcaccaaagggaaa 183  Q
    |||||||||| |||||| | |||||||||||||||||||||    
T  6398118 atgatatccttcaaagttattgttgcctcaccaaagggaaa 6398078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 1717080 - 1717025
Alignment:
Q  134 cctaaaaccatgatatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 189  Q
    ||||||||||| |||||||||||||| | ||| || |||||||| |||||||||||    
T  1717080 cctaaaaccataatatcctccaaagtgattgtggcttcaccaaaaggaaacacaaa 1717025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University